Factsheet for VIT_06s0061g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G311600.1	Wheat	mitochondrion	25.46	61.8
VIT_06s0004g04230.t01	Wine grape	nucleus	34.26	50.68
VIT_13s0019g05370.t01	Wine grape	nucleus	33.8	50.34
VIT_06s0004g04250.t01	Wine grape	nucleus	33.8	49.32
VIT_06s0004g04300.t01	Wine grape	nucleus	33.33	47.37
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	44.91	46.19
KRH30545	Soybean	mitochondrion, nucleus	42.13	45.73
KRH25129	Soybean	nucleus	45.37	43.56
Os09t0570850-00	Rice	nucleus	29.63	42.11
Bra018647.1-P	Field mustard	nucleus	43.52	36.58
CDX93584	Canola	nucleus	43.52	36.58
AT1G08170.1	Thale cress	nucleus	40.74	36.21
HORVU4Hr1G000750.1	Barley	nucleus	29.17	35.39
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	43.98	34.8
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	45.37	34.63
VIT_06s0004g04240.t01	Wine grape	nucleus	34.26	32.17
Zm00001d005322_P001	Maize	nucleus	36.57	30.15
CDX95087	Canola	nucleus	43.98	29.78
EER98531	Sorghum	nucleus	39.81	28.76
TraesCS4B01G002800.1	Wheat	nucleus	35.65	25.08

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100253395	wikigene:100253395	MapMan:12.1.3	EMBL:AM459104	ProteinID:CAN78957
ProteinID:CAN78957.1	ProteinID:CBI17119	ProteinID:CBI17119.3	UniProt:D7SN90	EMBL:FN594957	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	EntrezGene:LOC100253395	wikigene:LOC100253395	PFAM:PF00125
PRINTS:PR00621	PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI00019837CB
ArrayExpress:VIT_06s0061g00870	EnsemblPlantsGene:VIT_06s0061g00870	EnsemblPlants:VIT_06s0061g00870.t01	RefSeq:XP_002272312	RefSeq:XP_002272312.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:18413852..18414502

Molecular Weight (calculated)

24289.3 Da

IEP (calculated)

10.781

GRAVY (calculated)

-1.126

Length

216 amino acids

Sequence
(BLAST)

001: MAPKRSGKTR SKVVVKATRK VVQQTVEVTV LASKQKPPRE EQGKKISKKD KAPEELQREQ VSADEEPPKE LPTPVTQEEP PKKEEEKKTT TTQEGREEKK
101: RGRRRRRRTS GRRRKEGGEG YKRYVYRVLK QVHPGLGVSS KAMTVLSGFM NDMFERIAEE AAKLSKYTGK TTLSAREIQG AVKLVLPGEL QKHAMAEGTK
201: AVSNYMDYAA AGGHKQ

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.