Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93584 | Canola | nucleus | 69.55 | 65.76 |
| Bra018647.1-P | Field mustard | nucleus | 69.55 | 65.76 |
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 20.58 | 56.18 |
| CDX95087 | Canola | nucleus | 70.37 | 53.6 |
| AT5G02570.1 | Thale cress | nucleus | 27.57 | 50.76 |
| AT3G09480.1 | Thale cress | nucleus | 25.93 | 50.0 |
| AT3G53650.1 | Thale cress | nucleus | 28.4 | 50.0 |
| AT2G37470.1 | Thale cress | nucleus | 27.98 | 49.28 |
| AT2G28720.1 | Thale cress | nucleus | 28.4 | 45.7 |
| AT5G59910.1 | Thale cress | nucleus | 27.98 | 45.33 |
| AT3G46030.1 | Thale cress | nucleus | 26.75 | 44.83 |
| AT3G45980.1 | Thale cress | nucleus | 27.57 | 44.67 |
| AT1G07790.1 | Thale cress | nucleus | 27.16 | 44.59 |
| AT5G22880.1 | Thale cress | nucleus | 26.34 | 44.14 |
| KRH30545 | Soybean | mitochondrion, nucleus | 34.16 | 41.71 |
| VIT_06s0061g00870.t01 | Wine grape | nucleus | 36.21 | 40.74 |
| KRH25129 | Soybean | nucleus | 36.21 | 39.11 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 32.51 | 37.62 |
| Os09t0570850-00 | Rice | nucleus | 22.63 | 36.18 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 23.46 | 32.02 |
| PGSC0003DMT400018366 | Potato | mitochondrion, nucleus | 34.16 | 30.4 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 34.16 | 29.33 |
| Zm00001d005322_P001 | Maize | nucleus | 30.04 | 27.86 |
| EER98531 | Sorghum | nucleus | 32.1 | 26.09 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 26.75 | 21.17 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | EntrezGene:837338 | ProteinID:AAF18256.1 | ProteinID:AAF79830.1 | ProteinID:AEE28257.1 |
| ArrayExpress:AT1G08170 | EnsemblPlantsGene:AT1G08170 | RefSeq:AT1G08170 | TAIR:AT1G08170 | RefSeq:AT1G08170-TAIR-G | EnsemblPlants:AT1G08170.1 |
| TAIR:AT1G08170.1 | EMBL:DQ056448 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| RefSeq:NP_172295.1 | PFAM:PF00125 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0007616 | PO:PO:0009046 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00621 | PANTHER:PTHR23428 |
| PANTHER:PTHR23428:SF50 | UniProt:Q9SGE3 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI00000A7C93 | SEG:seg |
Description
Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
Coordinates
chr1:-:2562769..2563706
Molecular Weight (calculated)
27222.4 Da
IEP (calculated)
8.891
GRAVY (calculated)
-0.820
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.