Factsheet for GSMUA_AchrUn_randomP19680_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G311600.1	Wheat	mitochondrion	29.05	68.54
GSMUA_Achr8P20900_001	Banana	nucleus	17.62	56.06
GSMUA_Achr9P04060_001	Banana	nucleus	30.95	55.56
GSMUA_Achr10P...	Banana	nucleus	17.14	54.55
GSMUA_Achr2P19080_001	Banana	nucleus	33.33	48.95
GSMUA_Achr7P15260_001	Banana	nucleus	32.86	45.39
VIT_06s0061g00870.t01	Wine grape	nucleus	46.19	44.91
Os09t0570850-00	Rice	nucleus	31.9	44.08
KRH25129	Soybean	nucleus	42.86	40.0
HORVU4Hr1G000750.1	Barley	nucleus	33.33	39.33
KRH30545	Soybean	mitochondrion, nucleus	37.14	39.2
Zm00001d005322_P001	Maize	nucleus	41.9	33.59
CDX93584	Canola	nucleus	40.0	32.68
Bra018647.1-P	Field mustard	nucleus	40.0	32.68
AT1G08170.1	Thale cress	nucleus	37.62	32.51
GSMUA_Achr6P33320_001	Banana	nucleus	31.43	31.88
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	41.43	31.87
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	40.95	30.39
EER98531	Sorghum	nucleus	42.38	29.77
TraesCS4B01G002800.1	Wheat	nucleus	42.86	29.32
CDX95087	Canola	nucleus	39.52	26.02

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:GSMUA_AchrUn_randomG19680_001	EnsemblPlants:GSMUA_AchrUn_randomP19680_001	EnsemblPlants:GSMUA_AchrUn_randomT19680_001	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	UniProt:M0UAM7	PFAM:PF00125	PRINTS:PR00621
PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI00029596F7	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19680_001]

Coordinates

chrchrUn_random:+:94782311..94783171

Molecular Weight (calculated)

22917.9 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.809

Length

210 amino acids

Sequence
(BLAST)

001: MAPKRTSRVL KTTKTVIEET VEVVVEAKDA QGPKEDLGEG KEAEPEGRQQ AEEEEPSREK EAEPPFEKSI IQQEETAGEG KEAESITDKE TQEEAAAVDK
101: RFSGGDGGEM DGTGRGYKRY VFRVLKHVHP GMGISSRAMV VLDGMMGDMF ERLAGEASRL STYTGKATLS SREIQGAVRL VLPGELGKRA ISEGTKAVSN
201: YMAADRHEQQ

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.