Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- vacuole 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
27291164
nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30545 | Soybean | mitochondrion, nucleus | 74.67 | 84.42 |
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 26.22 | 66.29 |
| KRG92106 | Soybean | nucleus | 32.44 | 53.68 |
| KRH22818 | Soybean | nucleus | 31.56 | 53.38 |
| KRH19721 | Soybean | nucleus | 32.89 | 53.24 |
| KRH26542 | Soybean | nucleus | 31.56 | 52.99 |
| KRH34681 | Soybean | nucleus | 32.0 | 52.55 |
| KRH67549 | Soybean | nucleus | 32.0 | 52.17 |
| KRG95819 | Soybean | nucleus | 32.0 | 52.17 |
| KRH29836 | Soybean | nucleus | 34.22 | 52.03 |
| KRH29832 | Soybean | nucleus | 34.22 | 52.03 |
| KRH29831 | Soybean | nucleus | 34.22 | 52.03 |
| KRH29833 | Soybean | nucleus | 32.89 | 51.75 |
| KRH24831 | Soybean | nucleus | 34.22 | 51.68 |
| KRH24833 | Soybean | nucleus | 34.22 | 51.68 |
| KRH24830 | Soybean | nucleus | 33.78 | 51.01 |
| VIT_06s0061g00870.t01 | Wine grape | nucleus | 43.56 | 45.37 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 40.0 | 42.86 |
| Os09t0570850-00 | Rice | nucleus | 28.44 | 42.11 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 29.78 | 37.64 |
| AT1G08170.1 | Thale cress | nucleus | 39.11 | 36.21 |
| Bra018647.1-P | Field mustard | nucleus | 40.44 | 35.41 |
| CDX93584 | Canola | nucleus | 40.44 | 35.41 |
| PGSC0003DMT400018366 | Potato | mitochondrion, nucleus | 40.89 | 33.7 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 40.89 | 32.51 |
| EER98531 | Sorghum | nucleus | 40.89 | 30.77 |
| Zm00001d005322_P001 | Maize | nucleus | 35.11 | 30.15 |
| CDX95087 | Canola | nucleus | 40.44 | 28.53 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 37.33 | 27.36 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100786873 | MapMan:12.1.3 | EMBL:ACUP02007208 | ncoils:Coil | EnsemblPlantsGene:GLYMA_12G082700 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | UniProt:I1LRA5 | InterPro:IPR009072 | EnsemblPlants:KRH25129 |
| ProteinID:KRH25129 | ProteinID:KRH25129.1 | PFAM:PF00125 | PRINTS:PR00621 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF50 |
| SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000233D89D | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr12:-:6554176..6555209
Molecular Weight (calculated)
25182.9 Da
IEP (calculated)
9.755
GRAVY (calculated)
-0.950
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRAEKLV VRSTKKVVES SVLVSVVGKR LTRGKKDTQT TDGEEEVGSQ EHLVVIPIQE VTPQAQKDSP NSAITTENKA EQENNTQDGG VENNQEEEEE
101: HEEVKEKKNK AKTPKGKNGK EKKRGRKKGR RSVEGYQRYV YRVLKQVHPE MGISSKCMTV LNNLMNDMFE RLAFEASKLK DYTGHMTLSS REIQGAVRLV
201: LPGELGKHAI AEGVKAVNNY TSYDA
101: HEEVKEKKNK AKTPKGKNGK EKKRGRKKGR RSVEGYQRYV YRVLKQVHPE MGISSKCMTV LNNLMNDMFE RLAFEASKLK DYTGHMTLSS REIQGAVRLV
201: LPGELGKHAI AEGVKAVNNY TSYDA
001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
Arabidopsis Description
Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.