Factsheet for Solyc06g074750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	87.63	90.84
TraesCS4A01G311600.1	Wheat	mitochondrion	19.08	60.67
Solyc03g071620.1.1	Tomato	nucleus	26.86	53.9
Solyc05g055440.1.1	Tomato	nucleus	27.56	53.06
Solyc06g074790.1.1	Tomato	nucleus	26.5	52.82
Solyc11g007920.1.1	Tomato	nucleus	26.86	52.78
Solyc11g007930.1.1	Tomato	nucleus	25.09	51.45
Solyc12g013510.1.1	Tomato	nucleus	25.09	51.08
Solyc06g074780.1.1	Tomato	nucleus	25.8	51.05
Solyc06g075800.1.1	Tomato	nucleus	26.15	50.68
Solyc11g066430.1.1	Tomato	nucleus	24.38	49.29
Solyc06g005390.1.1	Tomato	nucleus	25.44	48.98
Solyc02g038690.1.1	Tomato	nucleus	22.97	48.51
VIT_06s0061g00870.t01	Wine grape	nucleus	34.63	45.37
Solyc10g044580.1.1	Tomato	nucleus	20.85	43.7
KRH30545	Soybean	mitochondrion, nucleus	28.98	41.21
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	30.39	40.95
KRH25129	Soybean	nucleus	32.51	40.89
Os09t0570850-00	Rice	nucleus	21.91	40.79
HORVU4Hr1G000750.1	Barley	nucleus	23.32	37.08
AT1G08170.1	Thale cress	nucleus	29.33	34.16
Bra018647.1-P	Field mustard	nucleus	28.98	31.91
CDX93584	Canola	nucleus	28.98	31.91
Zm00001d005322_P001	Maize	nucleus	27.92	30.15
EER98531	Sorghum	nucleus	29.68	28.09
TraesCS4B01G002800.1	Wheat	nucleus	29.33	27.04
CDX95087	Canola	nucleus	28.98	25.71

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
UniProt:K4C9J2	PFAM:PF00125	PRINTS:PR00621	PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427
SUPFAM:SSF47113	EnsemblPlantsGene:Solyc06g074750.1	EnsemblPlants:Solyc06g074750.1.1	UniParc:UPI0002766791	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:46299770..46300621

Molecular Weight (calculated)

30999.8 Da

IEP (calculated)

9.644

GRAVY (calculated)

-0.997

Length

283 amino acids

Sequence
(BLAST)

001: MAPKKRGGRV RATVVTARKV VEETVSVVVT PVAGETETES QTLAEENQSF EILTPAPSEE PTPKRTINVQ DISEGKKAPR RKPDPAQQVD EDETQPADEP
101: EEMPSPPKKE SGQKKTQKRK PEPAQRGDED ETQPSEEPEE MPTPPKMEAD QRKAQKRKPD PAQKAKGGGE RKKKRAKVGG GVGPSEGYRR YVFRVMKQVH
201: PDMGISSKAM TVLNNLMGDM FERIANEAAI LTKYVGRTTL ASVDIQDAVK LVLPGELGKH AIAEGTNAVA NYVTNVEKSK SKP

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.