Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 25464976 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018455 | Potato | nucleus | 96.5 | 96.5 |
| Solyc06g074790.1.1 | Tomato | nucleus | 93.71 | 94.37 |
| GSMUA_Achr8P20900_001 | Banana | nucleus | 43.36 | 93.94 |
| GSMUA_Achr10P... | Banana | nucleus | 41.96 | 90.91 |
| Solyc11g066430.1.1 | Tomato | nucleus | 87.41 | 89.29 |
| Solyc11g007920.1.1 | Tomato | nucleus | 88.81 | 88.19 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 72.03 | 88.03 |
| Solyc03g071620.1.1 | Tomato | nucleus | 86.71 | 87.94 |
| CDX86049 | Canola | nucleus | 80.42 | 87.12 |
| Solyc12g013510.1.1 | Tomato | nucleus | 84.62 | 87.05 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 39.86 | 86.36 |
| Solyc06g075800.1.1 | Tomato | nucleus | 88.11 | 86.3 |
| Os05t0460475-00 | Rice | nucleus | 63.64 | 85.85 |
| Solyc02g038690.1.1 | Tomato | nucleus | 80.42 | 85.82 |
| Solyc05g055440.1.1 | Tomato | nucleus | 88.11 | 85.71 |
| Solyc11g007930.1.1 | Tomato | nucleus | 82.52 | 85.51 |
| Bra038267.1-P | Field mustard | nucleus | 81.82 | 85.4 |
| CDX99134 | Canola | nucleus | 81.82 | 85.4 |
| KRH34681 | Soybean | nucleus | 81.82 | 85.4 |
| KRG92106 | Soybean | nucleus | 81.12 | 85.29 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 81.12 | 85.29 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 81.12 | 85.29 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 81.12 | 85.29 |
| Bra007018.1-P | Field mustard | nucleus | 81.82 | 84.78 |
| Bra039810.1-P | Field mustard | nucleus | 81.82 | 84.78 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 81.82 | 84.78 |
| CDY52745 | Canola | nucleus | 81.12 | 84.67 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 80.42 | 84.56 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 79.72 | 84.44 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 56.64 | 84.38 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 56.64 | 84.38 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 56.64 | 84.38 |
| KRH19721 | Soybean | nucleus | 81.82 | 84.17 |
| Os01t0839500-00 | Rice | nucleus | 81.82 | 84.17 |
| Bra003150.1-P | Field mustard | nucleus | 81.12 | 84.06 |
| CDY30852 | Canola | nucleus | 81.12 | 84.06 |
| KRG95819 | Soybean | nucleus | 81.12 | 84.06 |
| KRH67549 | Soybean | nucleus | 81.12 | 84.06 |
| AT5G02570.1 | Thale cress | nucleus | 76.92 | 83.33 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 68.53 | 83.05 |
| AT2G37470.1 | Thale cress | nucleus | 79.72 | 82.61 |
| AT3G53650.1 | Thale cress | nucleus | 79.72 | 82.61 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 82.52 | 82.52 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 55.94 | 82.47 |
| Solyc06g005390.1.1 | Tomato | nucleus | 84.62 | 82.31 |
| EES03855 | Sorghum | nucleus | 77.62 | 81.02 |
| Zm00001d012423_P001 | Maize | plastid | 77.62 | 81.02 |
| Zm00001d042930_P001 | Maize | plastid | 77.62 | 81.02 |
| AT3G09480.1 | Thale cress | nucleus | 71.33 | 80.95 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 76.22 | 80.74 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 76.22 | 80.74 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 76.22 | 80.74 |
| TraesCSU01G077200.1 | Wheat | nucleus | 76.22 | 80.74 |
| TraesCSU01G077400.1 | Wheat | nucleus | 76.22 | 80.74 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 83.22 | 80.41 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 79.72 | 80.28 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 53.85 | 80.21 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 76.22 | 80.15 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 75.52 | 80.0 |
| Os03t0279000-00 | Rice | nucleus | 84.62 | 79.61 |
| EES18353 | Sorghum | nucleus | 81.82 | 79.59 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 75.52 | 79.41 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 75.52 | 79.41 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 74.83 | 79.26 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 74.83 | 79.26 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 67.83 | 78.86 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 74.83 | 78.68 |
| OQU92807 | Sorghum | nucleus | 81.12 | 78.38 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 74.13 | 77.94 |
| EES00304 | Sorghum | nucleus | 81.12 | 77.85 |
| Zm00001d044247_P001 | Maize | plastid | 80.42 | 77.7 |
| EES00399 | Sorghum | nucleus | 81.12 | 77.33 |
| EES00305 | Sorghum | nucleus | 80.42 | 77.18 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 80.42 | 77.18 |
| Zm00001d039821_P001 | Maize | plastid | 80.42 | 77.18 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 75.52 | 77.14 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 74.83 | 76.98 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 76.22 | 76.76 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 76.22 | 76.76 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 76.22 | 76.76 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 80.42 | 76.67 |
| Zm00001d011236_P001 | Maize | plastid | 80.42 | 76.67 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 79.72 | 76.51 |
| TraesCSU01G169300.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G169400.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G169500.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G169700.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G169800.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G169900.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G170400.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G170500.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G170600.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G170700.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G170900.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G171000.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCSU01G171100.1 | Wheat | nucleus | 79.02 | 76.35 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 81.12 | 76.32 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 81.12 | 76.32 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 81.12 | 76.32 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 81.12 | 76.32 |
| Zm00001d007084_P001 | Maize | plastid | 81.12 | 76.32 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 74.13 | 76.26 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 71.33 | 76.12 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 73.43 | 76.09 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 75.52 | 76.06 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 74.83 | 75.89 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 74.13 | 75.71 |
| EES15460 | Sorghum | nucleus | 80.42 | 75.66 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 80.42 | 75.66 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 80.42 | 75.66 |
| Zm00001d020580_P001 | Maize | plastid | 79.72 | 75.5 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 53.85 | 75.49 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 72.73 | 75.36 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 72.73 | 75.36 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 72.73 | 75.36 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 72.73 | 75.36 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 72.73 | 75.36 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 79.72 | 75.0 |
| EER97675 | Sorghum | nucleus | 79.02 | 74.83 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 79.02 | 74.83 |
| Zm00001d025913_P001 | Maize | plastid | 78.32 | 74.67 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 72.03 | 74.64 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 72.03 | 74.64 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 72.03 | 74.64 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 72.03 | 74.64 |
| EER96770 | Sorghum | nucleus | 79.72 | 74.51 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 79.72 | 74.51 |
| OQU87075 | Sorghum | nucleus | 79.72 | 74.51 |
| Os01t0153100-00 | Rice | nucleus | 79.72 | 74.51 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 79.02 | 74.34 |
| Os05t0574300-00 | Rice | nucleus | 79.02 | 74.34 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 72.03 | 74.1 |
| Zm00001d051591_P001 | Maize | plastid | 79.72 | 74.03 |
| Zm00001d032070_P001 | Maize | plastid | 77.62 | 74.0 |
| Zm00001d050100_P001 | Maize | plastid | 77.62 | 74.0 |
| Os01t0149600-01 | Rice | nucleus | 79.02 | 73.86 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 78.32 | 73.68 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 78.32 | 73.68 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 78.32 | 73.68 |
| Zm00001d005789_P001 | Maize | plastid | 78.32 | 73.68 |
| Os01t0153300-00 | Rice | nucleus | 79.72 | 73.55 |
| EES15092 | Sorghum | nucleus | 77.62 | 73.51 |
| Os01t0152300-00 | Rice | nucleus | 78.32 | 73.2 |
| Os01t0152900-00 | Rice | nucleus | 78.32 | 73.2 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 78.32 | 73.2 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 77.62 | 73.03 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 73.43 | 72.92 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 78.32 | 72.73 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 78.32 | 72.73 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 79.72 | 72.61 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 79.02 | 72.44 |
| TraesCS6B01G048500.1 | Wheat | unclear | 73.43 | 72.41 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 80.42 | 72.33 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 80.42 | 72.33 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 72.73 | 72.22 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 72.73 | 72.22 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 72.73 | 72.22 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 72.73 | 72.22 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 72.73 | 72.22 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 76.22 | 72.19 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 75.52 | 72.0 |
| EES07386 | Sorghum | nucleus | 77.62 | 71.61 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 72.03 | 71.53 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 72.03 | 71.53 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 76.92 | 71.43 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 72.03 | 71.03 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 75.52 | 70.59 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 74.83 | 70.39 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 71.33 | 70.34 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 74.83 | 69.93 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 74.83 | 69.93 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 57.34 | 69.49 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 74.83 | 69.03 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 74.13 | 68.83 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 75.52 | 68.79 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 62.94 | 68.18 |
| TraesCSU01G081100.1 | Wheat | nucleus | 73.43 | 68.18 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 56.64 | 68.07 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 75.52 | 67.92 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 83.22 | 67.61 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 76.92 | 67.07 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 73.43 | 66.88 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 80.42 | 66.86 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 76.22 | 66.46 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 75.52 | 66.26 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 75.52 | 65.06 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 72.73 | 63.8 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 80.42 | 63.54 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 75.52 | 63.53 |
| Solyc10g044580.1.1 | Tomato | nucleus | 58.74 | 62.22 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 79.02 | 61.75 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 50.35 | 61.54 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 78.32 | 61.2 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 76.22 | 60.89 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 76.22 | 60.56 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 76.22 | 60.56 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 72.73 | 60.12 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 71.33 | 59.65 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 81.12 | 54.72 |
| Os08t0490900-00 | Rice | nucleus | 81.12 | 54.72 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 78.32 | 53.59 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 68.53 | 53.26 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 78.32 | 53.08 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 74.83 | 50.95 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 70.63 | 48.79 |
| Zm00001d048491_P001 | Maize | plastid | 79.72 | 47.9 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 80.42 | 47.33 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 51.05 | 44.51 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 51.05 | 36.87 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 50.35 | 34.45 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 51.05 | 25.8 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| UniProt:K4C9J5 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF106 |
| SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc06g074780.1 | EnsemblPlants:Solyc06g074780.1.1 | UniParc:UPI0002766794 | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4C9J5]
Coordinates
chr6:-:46320722..46321153
Molecular Weight (calculated)
15784.5 Da
IEP (calculated)
10.786
GRAVY (calculated)
-0.637
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKTGGKKP AEKKPVEEKT VEEVPAEKKP KAGKKLPKDA AVDKKKKKAK KSIETYKIYI FKVLKQVHPD IGISSKSMGI MNSFINDIFE KLAQEASRLA
101: RINKKPTITS REIQTAVRLV LPGELAKHAV SEGTKAVTKF TSN
101: RINKKPTITS REIQTAVRLV LPGELAKHAV SEGTKAVTKF TSN
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
Arabidopsis Description
Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.