CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00305	Sorghum	nucleus	99.33	99.33
EES00399	Sorghum	nucleus	99.33	98.67
Zm00001d039821_P001	Maize	plastid	97.99	97.99
TraesCS6D01G046500.1	Wheat	nucleus	42.95	96.97
TraesCS3D01G088900.1	Wheat	nucleus	98.66	96.71
TraesCS4A01G260400.1	Wheat	nucleus	98.66	96.71
TraesCS4D01G054200.1	Wheat	nucleus	98.66	96.71
TraesCS7B01G394800.1	Wheat	nucleus	62.42	95.88
EES15460	Sorghum	nucleus	97.32	95.39
TraesCS6B01G055300.1	Wheat	nucleus	61.07	94.79
TraesCS6B01G055500.1	Wheat	nucleus	61.07	94.79
EER96770	Sorghum	nucleus	97.32	94.77
TraesCS3A01G088800.1	Wheat	nucleus	95.97	94.7
OQU92807	Sorghum	nucleus	93.96	94.59
Os05t0460475-00	Rice	nucleus	67.11	94.34
EES03855	Sorghum	nucleus	86.58	94.16
TraesCS6D01G046200.1	Wheat	nucleus, unclear	85.91	94.12
EES15092	Sorghum	nucleus	95.3	94.04
HORVU6Hr1G087190.1	Barley	nucleus	94.63	94.0
TraesCS3A01G075800.1	Wheat	nucleus	60.4	93.75
TraesCS4B01G054200.1	Wheat	nucleus	95.3	93.42
GSMUA_Achr9P04060_001	Banana	nucleus	73.15	93.16
EER97675	Sorghum	nucleus	93.96	92.72
TraesCS7B01G394500.1	Wheat	nucleus	59.73	92.71
TraesCS6A01G040500.1	Wheat	nucleus	84.56	92.65
TraesCS6D01G046600.1	Wheat	nucleus	84.56	92.65
TraesCS6A01G086400.1	Wheat	nucleus	83.89	92.59
TraesCS6B01G116000.1	Wheat	nucleus	83.89	92.59
TraesCSU01G077200.1	Wheat	nucleus	83.89	92.59
TraesCS7A01G491100.1	Wheat	extracellular, nucleus, unclear	87.92	92.25
TraesCS7B01G394900.1	Wheat	nucleus	87.92	92.25
TraesCS7D01G477300.1	Wheat	nucleus	87.92	92.25
TraesCS6D01G046400.1	Wheat	nucleus	86.58	92.14
TraesCS5A01G384300.1	Wheat	nucleus	93.96	92.11
TraesCS5B01G389100.1	Wheat	nucleus	93.96	92.11
TraesCS6A01G040400.1	Wheat	nucleus	85.91	92.09
HORVU6Hr1G015790.1	Barley	nucleus	83.22	91.85
TraesCS6A01G086200.1	Wheat	nucleus	83.22	91.85
TraesCSU01G077400.1	Wheat	nucleus	83.22	91.85
TraesCS7D01G477400.1	Wheat	nucleus	87.25	91.55
OQU87075	Sorghum	nucleus	93.96	91.5
TraesCS3A01G357500.1	Wheat	nucleus	83.22	91.18
TraesCS3D01G075900.1	Wheat	nucleus	83.22	91.18
TraesCS3D01G351300.1	Wheat	nucleus	83.22	91.18
TraesCS3D01G351400.1	Wheat	nucleus	83.22	91.18
EES07386	Sorghum	nucleus	94.63	90.97
TraesCS3D01G342400.1	Wheat	nucleus	83.89	90.58
TraesCS5D01G020000.1	Wheat	nucleus	95.3	90.45
TraesCS3B01G390000.1	Wheat	nucleus	82.55	90.44
TraesCS3D01G099000.1	Wheat	nucleus	82.55	90.44
TraesCS3B01G390100.1	Wheat	nucleus	81.88	90.37
HORVU7Hr1G110290.1	Barley	nucleus	61.74	90.2
HORVU0Hr1G006420.1	Barley	nucleus	83.22	89.86
HORVU3Hr1G034060.1	Barley	nucleus	83.22	89.86
TraesCS3A01G357400.1	Wheat	nucleus	83.22	89.86
TraesCS7A01G490900.1	Wheat	nucleus	83.22	89.86
TraesCS7A01G491000.1	Wheat	nucleus	83.22	89.86
TraesCS7B01G394700.1	Wheat	nucleus	83.22	89.86
TraesCS3B01G114600.1	Wheat	nucleus	81.21	89.63
TraesCS7B01G405800.1	Wheat	nucleus	83.22	89.21
TraesCS6A01G040200.1	Wheat	nucleus	82.55	89.13
TraesCS7B01G394600.1	Wheat	nucleus	82.55	89.13
TraesCS3B01G114400.1	Wheat	nucleus	80.54	88.89
EES18353	Sorghum	nucleus	87.25	88.44
TraesCS7B01G394100.1	Wheat	nucleus	81.88	88.41
TraesCS7B01G394400.1	Wheat	nucleus	81.88	88.41
KRH26542	Soybean	nucleus	79.19	88.06
KRH22818	Soybean	nucleus	78.52	87.97
TraesCS7D01G485700.1	Wheat	nucleus	81.88	87.77
Bra007018.1-P	Field mustard	nucleus	81.21	87.68
Bra039810.1-P	Field mustard	nucleus	80.54	86.96
PGSC0003DMT400043578	Potato	nucleus	81.88	86.52
KRH19721	Soybean	nucleus	80.54	86.33
PGSC0003DMT400077939	Potato	nucleus	84.56	86.3
AT3G46030.1	Thale cress	nucleus	83.89	86.21
AT5G59910.1	Thale cress	nucleus	86.58	86.0
Bra002520.1-P	Field mustard	nucleus	86.58	86.0
Bra020275.1-P	Field mustard	nucleus	81.88	85.92
Bra006685.1-P	Field mustard	nucleus	81.21	85.82
Solyc03g071620.1.1	Tomato	nucleus	81.21	85.82
Solyc06g075800.1.1	Tomato	nucleus	83.89	85.62
VIT_06s0004g04230.t01	Wine grape	nucleus	83.89	85.62
AT2G37470.1	Thale cress	nucleus	79.19	85.51
KRG95819	Soybean	nucleus	79.19	85.51
KRH67549	Soybean	nucleus	79.19	85.51
PGSC0003DMT400070382	Potato	nucleus	82.55	85.42
Bra038267.1-P	Field mustard	nucleus	78.52	85.4
KRH34681	Soybean	nucleus	78.52	85.4
TraesCS1D01G232900.1	Wheat	nucleus	89.93	85.35
GSMUA_Achr2P19080_001	Banana	nucleus	81.88	85.31
KRG92106	Soybean	nucleus	77.85	85.29
VIT_13s0019g05370.t01	Wine grape	nucleus	82.55	84.83
AT3G45980.1	Thale cress	nucleus	85.23	84.67
PGSC0003DMT400070383	Potato	nucleus	80.54	84.51
VIT_06s0004g04250.t01	Wine grape	nucleus	83.89	84.46
Bra002436.1-P	Field mustard	nucleus	79.87	84.4
Bra003150.1-P	Field mustard	nucleus	77.85	84.06
Solyc11g007920.1.1	Tomato	nucleus	81.21	84.03
Solyc11g066430.1.1	Tomato	nucleus	78.52	83.57
AT2G28720.1	Thale cress	nucleus	84.56	83.44
AT3G53650.1	Thale cress	nucleus	77.18	83.33
AT5G02570.1	Thale cress	nucleus	73.83	83.33
PGSC0003DMT400022099	Potato	nucleus	80.54	83.33
Solyc11g007930.1.1	Tomato	nucleus	77.18	83.33
Bra011930.1-P	Field mustard	nucleus	83.22	83.22
Bra035677.1-P	Field mustard	nucleus	83.22	83.22
KRH29833	Soybean	nucleus	79.87	83.22
KRH29831	Soybean	nucleus	82.55	83.11
KRH29832	Soybean	nucleus	82.55	83.11
KRH29836	Soybean	nucleus	82.55	83.11
Solyc06g074790.1.1	Tomato	nucleus	79.19	83.1
PGSC0003DMT400060096	Potato	nucleus	81.88	82.99
PGSC0003DMT400074994	Potato	nucleus	81.88	82.99
Solyc06g005390.1.1	Tomato	nucleus	81.88	82.99
TraesCS3D01G351500.1	Wheat	nucleus	68.46	82.93
AT5G22880.1	Thale cress	nucleus	80.54	82.76
Bra006639.1-P	Field mustard	nucleus	79.87	82.64
PGSC0003DMT400022074	Potato	nucleus	79.87	82.64
KRH24831	Soybean	nucleus	82.55	82.55
KRH24833	Soybean	nucleus	82.55	82.55
AT1G07790.1	Thale cress	nucleus	81.88	82.43
Solyc05g055440.1.1	Tomato	nucleus	81.21	82.31
Solyc12g013510.1.1	Tomato	nucleus	76.51	82.01
HORVU4Hr1G009040.2	Barley	nucleus	94.63	81.98
KRH24830	Soybean	nucleus	81.88	81.88
AT3G09480.1	Thale cress	nucleus	69.13	81.75
PGSC0003DMT400001108	Potato	nucleus	77.85	81.69
PGSC0003DMT400018456	Potato	nucleus	77.85	81.69
VIT_06s0004g04300.t01	Wine grape	nucleus	83.22	81.58
Solyc02g038690.1.1	Tomato	nucleus	73.15	81.34
PGSC0003DMT400018455	Potato	nucleus	77.85	81.12
Solyc06g074780.1.1	Tomato	nucleus	77.85	81.12
Bra000483.1-P	Field mustard	nucleus	83.89	80.65
HORVU6Hr1G005950.2	Barley	nucleus	82.55	79.35
TraesCS5D01G393900.1	Wheat	nucleus	87.25	79.27
TraesCS3B01G390300.1	Wheat	nucleus	71.14	79.1
GSMUA_Achr7P15260_001	Banana	nucleus	79.87	78.29
HORVU7Hr1G110130.1	Barley	nucleus	61.07	77.12
HORVU6Hr1G008320.1	Barley	nucleus	80.54	76.43
HORVU1Hr1G091370.1	Barley	nucleus	81.21	76.1
HORVU6Hr1G015760.1	Barley	nucleus, plastid	83.22	76.07
HORVU7Hr1G110170.1	Barley	nucleus	83.22	76.07
HORVU3Hr1G013530.1	Barley	nucleus	82.55	75.0
HORVU7Hr1G110330.2	Barley	nucleus	59.73	74.79
HORVU4Hr1G070240.1	Barley	nucleus	83.22	74.7
PGSC0003DMT400074020	Potato	nucleus	67.11	74.07
HORVU7Hr1G110190.1	Barley	nucleus	65.1	73.48
HORVU3Hr1G013680.1	Barley	nucleus	82.55	72.35
HORVU7Hr1G110090.1	Barley	nucleus, plastid	83.22	71.68
HORVU6Hr1G006110.1	Barley	nucleus, plastid	54.36	69.23
HORVU6Hr1G083110.1	Barley	nucleus	79.19	69.01
CDX71015	Canola	nucleus	29.53	66.67
HORVU5Hr1G094500.1	Barley	nucleus, plastid	93.29	65.57
Solyc10g044580.1.1	Tomato	nucleus	57.72	63.7
HORVU3Hr1G086580.1	Barley	nucleus, plastid	69.13	55.98
VIT_06s0004g04240.t01	Wine grape	nucleus	85.23	55.22
HORVU3Hr1G086610.2	Barley	nucleus	77.18	54.76
GSMUA_Achr6P33320_001	Banana	nucleus	70.47	50.72
EER98531	Sorghum	nucleus	48.99	24.41
PGSC0003DMT400074018	Potato	nucleus	58.39	22.83

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	UniProt:C5XPC6	EnsemblPlants:EES00304	ProteinID:EES00304	ProteinID:EES00304.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621
ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF72	SMART:SM00427	EnsemblPlantsGene:SORBI_3003G067300	SUPFAM:SSF47113
unigene:Sbi.18502	UniParc:UPI0001A84708	RefSeq:XP_002455184.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:5728729..5729667

Molecular Weight (calculated)

16061.7 Da

IEP (calculated)

10.769

GRAVY (calculated)

-0.680

Length

149 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AKKPAEEEPA AEKAPAGKKP KAEKRLPAGK SAGKEGGDKK GKKKAKKSVE TYKIYIFKVL KQVHPDIGIS SKAMSIMNSF INDIFEKLAG
101: EAAKLARYNK KPTITSREIQ TSVRLVLPGE LAKHAVSEGT KAVTKFTSS

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.