CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	42.18	93.94
EES03855	Sorghum	nucleus	83.67	89.78
KRH26542	Soybean	nucleus	81.63	89.55
KRH22818	Soybean	nucleus	80.95	89.47
OQU92807	Sorghum	nucleus	89.12	88.51
PGSC0003DMT400043578	Potato	nucleus	84.35	87.94
KRH19721	Soybean	nucleus	82.99	87.77
KRG95819	Soybean	nucleus	82.31	87.68
Bra007018.1-P	Field mustard	nucleus	82.31	87.68
KRH67549	Soybean	nucleus	82.31	87.68
KRH34681	Soybean	nucleus	81.63	87.59
KRG92106	Soybean	nucleus	80.95	87.5
EES00304	Sorghum	nucleus	88.44	87.25
Solyc03g071620.1.1	Tomato	nucleus	83.67	87.23
AT2G37470.1	Thale cress	nucleus	81.63	86.96
Bra039810.1-P	Field mustard	nucleus	81.63	86.96
EES00399	Sorghum	nucleus	88.44	86.67
EES00305	Sorghum	nucleus	87.76	86.58
EES15460	Sorghum	nucleus	89.12	86.18
PGSC0003DMT400070382	Potato	nucleus	84.35	86.11
PGSC0003DMT400077939	Potato	nucleus	85.03	85.62
AT3G53650.1	Thale cress	nucleus	80.27	85.51
PGSC0003DMT400022099	Potato	nucleus	83.67	85.42
Solyc06g075800.1.1	Tomato	nucleus	84.35	84.93
AT5G02570.1	Thale cress	nucleus	76.19	84.85
Bra003150.1-P	Field mustard	nucleus	79.59	84.78
PGSC0003DMT400022074	Potato	nucleus	82.99	84.72
Solyc11g007920.1.1	Tomato	nucleus	82.99	84.72
PGSC0003DMT400070383	Potato	nucleus	81.63	84.51
EER96770	Sorghum	nucleus	87.76	84.31
Solyc12g013510.1.1	Tomato	nucleus	79.59	84.17
Bra038267.1-P	Field mustard	nucleus	78.23	83.94
Solyc06g074790.1.1	Tomato	nucleus	80.95	83.8
VIT_06s0004g04250.t01	Wine grape	nucleus	84.35	83.78
VIT_06s0004g04230.t01	Wine grape	nucleus	82.99	83.56
VIT_13s0019g05370.t01	Wine grape	nucleus	82.31	83.45
EES15092	Sorghum	nucleus	85.71	83.44
Solyc11g007930.1.1	Tomato	nucleus	78.23	83.33
KRH29833	Soybean	nucleus	80.95	83.22
KRH29831	Soybean	nucleus	83.67	83.11
KRH29832	Soybean	nucleus	83.67	83.11
KRH29836	Soybean	nucleus	83.67	83.11
PGSC0003DMT400018456	Potato	nucleus	80.27	83.1
OQU87075	Sorghum	nucleus	86.39	83.01
PGSC0003DMT400060096	Potato	nucleus	82.99	82.99
Bra006685.1-P	Field mustard	nucleus	79.59	82.98
Solyc02g038690.1.1	Tomato	nucleus	75.51	82.84
AT3G46030.1	Thale cress	nucleus	81.63	82.76
AT5G59910.1	Thale cress	nucleus	84.35	82.67
KRH24833	Soybean	nucleus	83.67	82.55
KRH24831	Soybean	nucleus	83.67	82.55
KRH24830	Soybean	nucleus	83.67	82.55
AT3G09480.1	Thale cress	nucleus	70.75	82.54
Solyc05g055440.1.1	Tomato	nucleus	82.31	82.31
Bra002436.1-P	Field mustard	nucleus	78.91	82.27
Solyc11g066430.1.1	Tomato	nucleus	78.23	82.14
EER97675	Sorghum	nucleus	84.35	82.12
PGSC0003DMT400018455	Potato	nucleus	79.59	81.82
Solyc06g074780.1.1	Tomato	nucleus	79.59	81.82
Bra020275.1-P	Field mustard	nucleus	78.91	81.69
PGSC0003DMT400074994	Potato	nucleus	81.63	81.63
Solyc06g005390.1.1	Tomato	nucleus	81.63	81.63
Bra002520.1-P	Field mustard	nucleus	82.99	81.33
EES07386	Sorghum	nucleus	85.71	81.29
PGSC0003DMT400001108	Potato	nucleus	78.23	80.99
VIT_06s0004g04300.t01	Wine grape	nucleus	83.67	80.92
AT3G45980.1	Thale cress	nucleus	82.31	80.67
AT1G07790.1	Thale cress	nucleus	80.95	80.41
AT2G28720.1	Thale cress	nucleus	82.31	80.13
AT5G22880.1	Thale cress	nucleus	78.91	80.0
Bra011930.1-P	Field mustard	nucleus	80.95	79.87
Bra035677.1-P	Field mustard	nucleus	80.95	79.87
Bra006639.1-P	Field mustard	nucleus	78.23	79.86
Bra000483.1-P	Field mustard	nucleus	80.95	76.77
PGSC0003DMT400074020	Potato	nucleus	66.67	72.59
CDX71015	Canola	nucleus	29.25	65.15
Solyc10g044580.1.1	Tomato	nucleus	57.14	62.22
VIT_06s0004g04240.t01	Wine grape	nucleus	84.35	53.91
PGSC0003DMT400074018	Potato	nucleus	59.18	22.83
EER98531	Sorghum	nucleus	46.26	22.74

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:8061771	UniProt:C5YZA2	EnsemblPlants:EES18353	ProteinID:EES18353
ProteinID:EES18353.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125
PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF108	SMART:SM00427	EnsemblPlantsGene:SORBI_3009G164200
SUPFAM:SSF47113	UniParc:UPI0001A888F8	RefSeq:XP_002439923.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:52057066..52057611

Molecular Weight (calculated)

15930.6 Da

IEP (calculated)

10.851

GRAVY (calculated)

-0.700

Length

147 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA EKKPAAEEKA PKAAEKKPPK AEKRLPSSKD GGGGGGKKGK KKAKKSVETY KIYIFKVLKQ VHPDIGISAK AMSIMNSFIN DIFEKLAQEA
101: ARLARYNKKP TITSREIQTS VRLVLPGELA KHAVSEGTKA VTKFTSA

Best Arabidopsis Sequence Match ( AT2G37470.1 )
(BLAST)

001: MAPKAAEKKP AEKKPAGKAP AEKLPKAEKK ISKDAGGSEK KKKKSKKSVE TYKIYIFKVL KQVHPDVGIS GKAMGIMNSF INDIFEKLAQ ESSKLARYNK
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS

Arabidopsis Description

Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.