Factsheet for GSMUA_Achr10P02560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
endoplasmic reticulum 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20900_001	Banana	nucleus	96.97	96.97
CDX71015	Canola	nucleus	59.09	59.09
GSMUA_Achr9P04060_001	Banana	nucleus	96.97	54.7
AT3G09480.1	Thale cress	nucleus	89.39	46.83
AT5G02570.1	Thale cress	nucleus	92.42	46.21
KRH22818	Soybean	nucleus	92.42	45.86
KRH26542	Soybean	nucleus	92.42	45.52
Solyc02g038690.1.1	Tomato	nucleus	90.91	44.78
KRH19721	Soybean	nucleus	93.94	44.6
KRH34681	Soybean	nucleus	92.42	44.53
KRG95819	Soybean	nucleus	92.42	44.2
KRH67549	Soybean	nucleus	92.42	44.2
KRG92106	Soybean	nucleus	90.91	44.12
GSMUA_Achr2P19080_001	Banana	nucleus	95.45	44.06
Solyc12g013510.1.1	Tomato	nucleus	92.42	43.88
Bra038267.1-P	Field mustard	nucleus	90.91	43.8
AT3G53650.1	Thale cress	nucleus	90.91	43.48
Solyc11g007930.1.1	Tomato	nucleus	90.91	43.48
PGSC0003DMT400043578	Potato	nucleus	92.42	43.26
Solyc03g071620.1.1	Tomato	nucleus	92.42	43.26
PGSC0003DMT400070382	Potato	nucleus	93.94	43.06
Solyc11g007920.1.1	Tomato	nucleus	93.94	43.06
Bra020275.1-P	Field mustard	nucleus	92.42	42.96
Solyc11g066430.1.1	Tomato	nucleus	90.91	42.86
VIT_13s0019g05370.t01	Wine grape	nucleus	93.94	42.76
Bra039810.1-P	Field mustard	nucleus	89.39	42.75
AT2G37470.1	Thale cress	nucleus	89.39	42.75
Bra007018.1-P	Field mustard	nucleus	89.39	42.75
KRH29833	Soybean	nucleus	92.42	42.66
Bra002436.1-P	Field mustard	nucleus	90.91	42.55
Bra006685.1-P	Field mustard	nucleus	90.91	42.55
VIT_06s0004g04230.t01	Wine grape	nucleus	93.94	42.47
PGSC0003DMT400022099	Potato	nucleus	92.42	42.36
PGSC0003DMT400022074	Potato	nucleus	92.42	42.36
PGSC0003DMT400070383	Potato	nucleus	90.91	42.25
PGSC0003DMT400001108	Potato	nucleus	90.91	42.25
EES18353	Sorghum	nucleus	93.94	42.18
GSMUA_Achr7P15260_001	Banana	nucleus	96.97	42.11
Bra003150.1-P	Field mustard	nucleus	87.88	42.03
PGSC0003DMT400018455	Potato	nucleus	90.91	41.96
Solyc06g074780.1.1	Tomato	nucleus	90.91	41.96
Solyc06g075800.1.1	Tomato	nucleus	92.42	41.78
PGSC0003DMT400077939	Potato	nucleus	92.42	41.78
Bra006639.1-P	Field mustard	nucleus	90.91	41.67
Solyc06g074790.1.1	Tomato	nucleus	89.39	41.55
PGSC0003DMT400018456	Potato	nucleus	89.39	41.55
Solyc05g055440.1.1	Tomato	nucleus	92.42	41.5
PGSC0003DMT400060096	Potato	nucleus	92.42	41.5
AT3G46030.1	Thale cress	nucleus	90.91	41.38
AT5G22880.1	Thale cress	nucleus	90.91	41.38
KRH29832	Soybean	nucleus	92.42	41.22
VIT_06s0004g04250.t01	Wine grape	nucleus	92.42	41.22
KRH29831	Soybean	nucleus	92.42	41.22
KRH29836	Soybean	nucleus	92.42	41.22
Bra011930.1-P	Field mustard	nucleus	92.42	40.94
KRH24830	Soybean	nucleus	92.42	40.94
KRH24831	Soybean	nucleus	92.42	40.94
KRH24833	Soybean	nucleus	92.42	40.94
Bra035677.1-P	Field mustard	nucleus	92.42	40.94
PGSC0003DMT400074994	Potato	nucleus	90.91	40.82
Solyc06g005390.1.1	Tomato	nucleus	90.91	40.82
VIT_06s0004g04300.t01	Wine grape	nucleus	93.94	40.79
AT5G59910.1	Thale cress	nucleus	92.42	40.67
AT1G07790.1	Thale cress	nucleus	90.91	40.54
AT2G28720.1	Thale cress	nucleus	92.42	40.4
Bra002520.1-P	Field mustard	nucleus	90.91	40.0
AT3G45980.1	Thale cress	nucleus	90.91	40.0
Bra000483.1-P	Field mustard	nucleus	92.42	39.35
PGSC0003DMT400074020	Potato	nucleus	80.3	39.26
Solyc10g044580.1.1	Tomato	nucleus	68.18	33.33
GSMUA_Achr6P33320_001	Banana	nucleus	96.97	30.92
VIT_06s0004g04240.t01	Wine grape	nucleus	93.94	26.96
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	54.55	17.14
PGSC0003DMT400074018	Potato	nucleus	65.15	11.29

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr10G02560_001	EnsemblPlants:GSMUA_Achr10P02560_001	EnsemblPlants:GSMUA_Achr10T02560_001	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	UniProt:M0RET3	PFAM:PF00125	PRINTS:PR00621
ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF175	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0002953CE1

Description

Histone H2B.11 [Source:GMGC_GENE;Acc:GSMUA_Achr10G02560_001]

Coordinates

chr10:-:7404271..7404847

Molecular Weight (calculated)

7270.8 Da

IEP (calculated)

10.568

GRAVY (calculated)

-0.192

Length

66 amino acids

Sequence
(BLAST)

1: MSIMNSFIND IFEKLAAEAS RLARYNKKPT ITSREVQTSV RLVLPGELAK HAVSEGTKAV TKFTSS

Best Arabidopsis Sequence Match ( AT2G28720.1 )
(BLAST)

001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S

Arabidopsis Description

Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.