Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 96.97 | 96.97 |
| CDX71015 | Canola | nucleus | 60.61 | 60.61 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 100.0 | 56.41 |
| AT5G02570.1 | Thale cress | nucleus | 95.45 | 47.73 |
| AT3G09480.1 | Thale cress | nucleus | 90.91 | 47.62 |
| KRH22818 | Soybean | nucleus | 95.45 | 47.37 |
| KRH26542 | Soybean | nucleus | 95.45 | 47.01 |
| Solyc02g038690.1.1 | Tomato | nucleus | 93.94 | 46.27 |
| KRH19721 | Soybean | nucleus | 96.97 | 46.04 |
| KRH34681 | Soybean | nucleus | 95.45 | 45.99 |
| KRH67549 | Soybean | nucleus | 95.45 | 45.65 |
| KRG95819 | Soybean | nucleus | 95.45 | 45.65 |
| KRG92106 | Soybean | nucleus | 93.94 | 45.59 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 98.48 | 45.45 |
| Solyc12g013510.1.1 | Tomato | nucleus | 95.45 | 45.32 |
| Bra038267.1-P | Field mustard | nucleus | 93.94 | 45.26 |
| AT3G53650.1 | Thale cress | nucleus | 93.94 | 44.93 |
| Solyc11g007930.1.1 | Tomato | nucleus | 93.94 | 44.93 |
| PGSC0003DMT400043578 | Potato | nucleus | 95.45 | 44.68 |
| Solyc03g071620.1.1 | Tomato | nucleus | 95.45 | 44.68 |
| PGSC0003DMT400070382 | Potato | nucleus | 96.97 | 44.44 |
| Solyc11g007920.1.1 | Tomato | nucleus | 96.97 | 44.44 |
| Solyc11g066430.1.1 | Tomato | nucleus | 93.94 | 44.29 |
| Bra007018.1-P | Field mustard | nucleus | 92.42 | 44.2 |
| Bra039810.1-P | Field mustard | nucleus | 92.42 | 44.2 |
| AT2G37470.1 | Thale cress | nucleus | 92.42 | 44.2 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 96.97 | 44.14 |
| KRH29833 | Soybean | nucleus | 95.45 | 44.06 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 96.97 | 43.84 |
| PGSC0003DMT400022099 | Potato | nucleus | 95.45 | 43.75 |
| PGSC0003DMT400022074 | Potato | nucleus | 95.45 | 43.75 |
| Bra020275.1-P | Field mustard | nucleus | 93.94 | 43.66 |
| PGSC0003DMT400070383 | Potato | nucleus | 93.94 | 43.66 |
| PGSC0003DMT400001108 | Potato | nucleus | 93.94 | 43.66 |
| Bra003150.1-P | Field mustard | nucleus | 90.91 | 43.48 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 100.0 | 43.42 |
| Solyc06g074780.1.1 | Tomato | nucleus | 93.94 | 43.36 |
| PGSC0003DMT400018455 | Potato | nucleus | 93.94 | 43.36 |
| Bra002436.1-P | Field mustard | nucleus | 92.42 | 43.26 |
| Bra006685.1-P | Field mustard | nucleus | 92.42 | 43.26 |
| Solyc06g075800.1.1 | Tomato | nucleus | 95.45 | 43.15 |
| PGSC0003DMT400077939 | Potato | nucleus | 95.45 | 43.15 |
| PGSC0003DMT400018456 | Potato | nucleus | 92.42 | 42.96 |
| Solyc06g074790.1.1 | Tomato | nucleus | 92.42 | 42.96 |
| PGSC0003DMT400060096 | Potato | nucleus | 95.45 | 42.86 |
| Solyc05g055440.1.1 | Tomato | nucleus | 95.45 | 42.86 |
| KRH29836 | Soybean | nucleus | 95.45 | 42.57 |
| KRH29832 | Soybean | nucleus | 95.45 | 42.57 |
| KRH29831 | Soybean | nucleus | 95.45 | 42.57 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 95.45 | 42.57 |
| Bra006639.1-P | Field mustard | nucleus | 92.42 | 42.36 |
| Bra011930.1-P | Field mustard | nucleus | 95.45 | 42.28 |
| Bra035677.1-P | Field mustard | nucleus | 95.45 | 42.28 |
| KRH24830 | Soybean | nucleus | 95.45 | 42.28 |
| KRH24831 | Soybean | nucleus | 95.45 | 42.28 |
| KRH24833 | Soybean | nucleus | 95.45 | 42.28 |
| PGSC0003DMT400074994 | Potato | nucleus | 93.94 | 42.18 |
| Solyc06g005390.1.1 | Tomato | nucleus | 93.94 | 42.18 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 96.97 | 42.11 |
| AT3G46030.1 | Thale cress | nucleus | 92.42 | 42.07 |
| AT5G22880.1 | Thale cress | nucleus | 92.42 | 42.07 |
| AT5G59910.1 | Thale cress | nucleus | 95.45 | 42.0 |
| AT1G07790.1 | Thale cress | nucleus | 93.94 | 41.89 |
| AT2G28720.1 | Thale cress | nucleus | 95.45 | 41.72 |
| AT3G45980.1 | Thale cress | nucleus | 92.42 | 40.67 |
| Bra002520.1-P | Field mustard | nucleus | 92.42 | 40.67 |
| Bra000483.1-P | Field mustard | nucleus | 95.45 | 40.65 |
| PGSC0003DMT400074020 | Potato | nucleus | 81.82 | 40.0 |
| Solyc10g044580.1.1 | Tomato | nucleus | 71.21 | 34.81 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 100.0 | 31.88 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 96.97 | 27.83 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 56.06 | 17.62 |
| PGSC0003DMT400074018 | Potato | nucleus | 66.67 | 11.55 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr8G20900_001 | EnsemblPlants:GSMUA_Achr8P20900_001 | EnsemblPlants:GSMUA_Achr8T20900_001 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | UniProt:M0TS93 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF108 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000295EBC7 |
Description
Histone H2B.11 [Source:GMGC_GENE;Acc:GSMUA_Achr8G20900_001]
Coordinates
chr8:-:25973001..25973459
Molecular Weight (calculated)
7341.9 Da
IEP (calculated)
10.568
GRAVY (calculated)
-0.268
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MSIMNSFIND IFEKLAQEAS RLARYNKKPT ITSREIQTSV RLVLPGELAK HAVSEGTKAV TKFTSS
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
Arabidopsis Description
Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.