Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
plastid: 26371478 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043578 | Potato | nucleus | 99.29 | 99.29 |
| GSMUA_Achr8P20900_001 | Banana | nucleus | 44.68 | 95.45 |
| Solyc12g013510.1.1 | Tomato | nucleus | 92.2 | 93.53 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 77.31 | 93.16 |
| Solyc11g007930.1.1 | Tomato | nucleus | 90.78 | 92.75 |
| GSMUA_Achr10P... | Banana | nucleus | 43.26 | 92.42 |
| Solyc11g007920.1.1 | Tomato | nucleus | 94.33 | 92.36 |
| Solyc05g055440.1.1 | Tomato | nucleus | 95.74 | 91.84 |
| Solyc02g038690.1.1 | Tomato | nucleus | 87.23 | 91.79 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 62.41 | 91.67 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 62.41 | 91.67 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 95.74 | 91.22 |
| Solyc06g075800.1.1 | Tomato | nucleus | 94.33 | 91.1 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 94.33 | 91.1 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 42.55 | 90.91 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 62.41 | 90.72 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 61.7 | 90.62 |
| Solyc06g074790.1.1 | Tomato | nucleus | 90.78 | 90.14 |
| KRH29831 | Soybean | nucleus | 93.62 | 89.19 |
| KRH29832 | Soybean | nucleus | 93.62 | 89.19 |
| KRH29836 | Soybean | nucleus | 93.62 | 89.19 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 85.82 | 88.97 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 85.82 | 88.97 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 85.82 | 88.97 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 95.74 | 88.82 |
| KRH29833 | Soybean | nucleus | 90.07 | 88.81 |
| KRH24831 | Soybean | nucleus | 93.62 | 88.59 |
| KRH24833 | Soybean | nucleus | 93.62 | 88.59 |
| Solyc11g066430.1.1 | Tomato | nucleus | 87.94 | 88.57 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 86.52 | 88.41 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 85.11 | 88.24 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 84.4 | 88.15 |
| KRH24830 | Soybean | nucleus | 92.91 | 87.92 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 59.57 | 87.5 |
| Solyc06g005390.1.1 | Tomato | nucleus | 90.78 | 87.07 |
| Os05t0460475-00 | Rice | nucleus | 65.25 | 86.79 |
| Solyc06g074780.1.1 | Tomato | nucleus | 87.94 | 86.71 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 72.34 | 86.44 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 87.23 | 86.01 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 81.56 | 85.19 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 81.56 | 85.19 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 81.56 | 85.19 |
| TraesCSU01G077200.1 | Wheat | nucleus | 81.56 | 85.19 |
| Os01t0839500-00 | Rice | nucleus | 83.69 | 84.89 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 80.85 | 84.44 |
| TraesCSU01G077400.1 | Wheat | nucleus | 80.85 | 84.44 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 80.85 | 83.82 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 80.85 | 83.82 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 80.85 | 83.82 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 87.94 | 83.78 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 80.14 | 83.7 |
| EES18353 | Sorghum | nucleus | 87.23 | 83.67 |
| EES03855 | Sorghum | nucleus | 80.85 | 83.21 |
| Zm00001d012423_P001 | Maize | plastid | 80.85 | 83.21 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 80.14 | 83.09 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 80.14 | 83.09 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 81.56 | 82.73 |
| Zm00001d042930_P001 | Maize | plastid | 80.14 | 82.48 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 82.98 | 82.39 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 82.98 | 82.39 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 82.98 | 82.39 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 78.72 | 82.22 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 82.27 | 81.69 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 82.27 | 81.69 |
| Zm00001d011236_P001 | Maize | plastid | 86.52 | 81.33 |
| EES00304 | Sorghum | nucleus | 85.82 | 81.21 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 79.43 | 81.16 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 79.43 | 81.16 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 79.43 | 81.16 |
| OQU92807 | Sorghum | nucleus | 85.11 | 81.08 |
| EES00399 | Sorghum | nucleus | 85.82 | 80.67 |
| EES00305 | Sorghum | nucleus | 85.11 | 80.54 |
| Zm00001d039821_P001 | Maize | plastid | 85.11 | 80.54 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 78.72 | 80.43 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 78.72 | 80.43 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 78.72 | 80.43 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 78.72 | 80.43 |
| TraesCSU01G169300.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G169400.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G169500.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G169700.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G169800.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G169900.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G170400.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G170500.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G170600.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G170700.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G170900.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G171000.1 | Wheat | nucleus | 84.4 | 80.41 |
| TraesCSU01G171100.1 | Wheat | nucleus | 84.4 | 80.41 |
| Os03t0279000-00 | Rice | nucleus | 86.52 | 80.26 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 86.52 | 80.26 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 79.43 | 80.0 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 79.43 | 80.0 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 84.4 | 79.87 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 78.72 | 79.86 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 78.72 | 79.86 |
| Zm00001d044247_P001 | Maize | plastid | 83.69 | 79.73 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 78.01 | 79.71 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 78.01 | 79.71 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 78.01 | 79.71 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 69.5 | 79.67 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 85.82 | 79.61 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 85.82 | 79.61 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 85.82 | 79.61 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 57.45 | 79.41 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 83.69 | 79.19 |
| EER96770 | Sorghum | nucleus | 85.82 | 79.08 |
| OQU87075 | Sorghum | nucleus | 85.82 | 79.08 |
| EES15460 | Sorghum | nucleus | 85.11 | 78.95 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 85.11 | 78.95 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 85.11 | 78.95 |
| Zm00001d007084_P001 | Maize | plastid | 85.11 | 78.95 |
| Zm00001d020580_P001 | Maize | plastid | 84.4 | 78.81 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 78.72 | 78.72 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 83.69 | 78.67 |
| Zm00001d025913_P001 | Maize | plastid | 83.69 | 78.67 |
| Os01t0153100-00 | Rice | nucleus | 85.11 | 78.43 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 84.4 | 78.29 |
| Os05t0574300-00 | Rice | nucleus | 84.4 | 78.29 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 84.4 | 78.29 |
| Zm00001d005789_P001 | Maize | plastid | 84.4 | 78.29 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 83.69 | 78.15 |
| Zm00001d050100_P001 | Maize | plastid | 82.98 | 78.0 |
| Os01t0149600-01 | Rice | nucleus | 84.4 | 77.78 |
| Os01t0152900-00 | Rice | nucleus | 84.4 | 77.78 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 79.43 | 77.78 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 83.69 | 77.63 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 83.69 | 77.63 |
| EES15092 | Sorghum | nucleus | 82.98 | 77.48 |
| Zm00001d032070_P001 | Maize | plastid | 82.27 | 77.33 |
| Zm00001d051591_P001 | Maize | plastid | 84.4 | 77.27 |
| TraesCS6B01G048500.1 | Wheat | unclear | 79.43 | 77.24 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 83.69 | 77.12 |
| Os01t0152300-00 | Rice | nucleus | 83.69 | 77.12 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 83.69 | 77.12 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 78.72 | 77.08 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 78.72 | 77.08 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 78.72 | 77.08 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 78.72 | 77.08 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 78.72 | 77.08 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 78.72 | 77.08 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 82.98 | 76.97 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 82.98 | 76.97 |
| EER97675 | Sorghum | nucleus | 82.27 | 76.82 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 82.27 | 76.82 |
| EES07386 | Sorghum | nucleus | 84.4 | 76.77 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 83.69 | 76.62 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 85.11 | 76.43 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 78.01 | 76.39 |
| Os01t0153300-00 | Rice | nucleus | 83.69 | 76.13 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 72.34 | 76.12 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 80.85 | 76.0 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 82.98 | 75.97 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 78.01 | 75.86 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 85.11 | 75.47 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 85.11 | 75.47 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 77.31 | 75.17 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 82.98 | 75.0 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 81.56 | 74.68 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 80.85 | 74.51 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 80.85 | 74.51 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 80.14 | 74.34 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 80.14 | 73.86 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 80.14 | 73.86 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 61.7 | 73.73 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 80.85 | 73.55 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 79.43 | 73.2 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 79.43 | 73.2 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 79.43 | 73.2 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 79.43 | 72.73 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 80.85 | 72.61 |
| TraesCSU01G081100.1 | Wheat | nucleus | 78.72 | 72.08 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 60.28 | 71.43 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 79.43 | 71.34 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 81.56 | 70.55 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 87.94 | 70.45 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 81.56 | 70.12 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 78.72 | 69.81 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 65.25 | 69.7 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 80.85 | 69.51 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 81.56 | 69.28 |
| Solyc10g044580.1.1 | Tomato | nucleus | 65.96 | 68.89 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 83.69 | 68.6 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 78.72 | 68.1 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 80.85 | 67.06 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 54.61 | 65.81 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 84.4 | 65.75 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 84.4 | 65.03 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 83.69 | 64.48 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 81.56 | 64.25 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 78.72 | 64.16 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 80.85 | 63.33 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 80.85 | 63.33 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 73.76 | 60.82 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 95.74 | 58.7 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 85.82 | 57.08 |
| Os08t0490900-00 | Rice | nucleus | 84.4 | 56.13 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 82.98 | 55.98 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 83.69 | 55.92 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 70.92 | 54.35 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 79.43 | 53.33 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 75.89 | 51.69 |
| Zm00001d048491_P001 | Maize | plastid | 84.4 | 50.0 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 85.11 | 49.38 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 56.03 | 48.17 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 56.03 | 39.9 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 55.32 | 37.32 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 53.9 | 26.86 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| UniProt:K4BHJ2 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF106 |
| SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc03g071620.1 | EnsemblPlants:Solyc03g071620.1.1 | UniParc:UPI0002767BCF | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4BHJ2]
Coordinates
chr3:+:18283021..18283446
Molecular Weight (calculated)
15433.0 Da
IEP (calculated)
10.882
GRAVY (calculated)
-0.625
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKKPAAEKAP AEKKPKAGKK LPKDGAAAAA DKKKKRVKKS VETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL AQESSRLARY
101: NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.