Factsheet for Zm00001d020580_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96770	Sorghum	nucleus	98.01	96.73
Zm00001d011236_P001	Maize	plastid	95.36	96.0
Zm00001d005789_P001	Maize	plastid	96.03	95.39
OQU87075	Sorghum	nucleus	94.7	93.46
Zm00001d012423_P001	Maize	plastid	84.77	93.43
Zm00001d025913_P001	Maize	plastid	92.72	93.33
Zm00001d050100_P001	Maize	plastid	92.72	93.33
Zm00001d042930_P001	Maize	plastid	84.11	92.7
Zm00001d039821_P001	Maize	plastid	91.39	92.62
Zm00001d007084_P001	Maize	plastid	92.72	92.11
Zm00001d032070_P001	Maize	plastid	91.39	92.0
Zm00001d051591_P001	Maize	plastid	93.38	91.56
GSMUA_Achr9P04060_001	Banana	nucleus	70.86	91.45
Zm00001d044247_P001	Maize	plastid	88.08	89.86
Bra007018.1-P	Field mustard	nucleus	78.81	86.23
KRH26542	Soybean	nucleus	76.16	85.82
Bra039810.1-P	Field mustard	nucleus	78.15	85.51
KRH22818	Soybean	nucleus	74.83	84.96
KRG95819	Soybean	nucleus	77.48	84.78
KRH67549	Soybean	nucleus	77.48	84.78
PGSC0003DMT400043578	Potato	nucleus	78.81	84.4
Solyc03g071620.1.1	Tomato	nucleus	78.81	84.4
Solyc06g075800.1.1	Tomato	nucleus	81.46	84.25
PGSC0003DMT400077939	Potato	nucleus	81.46	84.25
KRH19721	Soybean	nucleus	77.48	84.17
KRG92106	Soybean	nucleus	75.5	83.82
Bra003150.1-P	Field mustard	nucleus	76.16	83.33
AT2G37470.1	Thale cress	nucleus	76.16	83.33
Bra038267.1-P	Field mustard	nucleus	75.5	83.21
KRH34681	Soybean	nucleus	75.5	83.21
Bra006685.1-P	Field mustard	nucleus	77.48	82.98
AT3G46030.1	Thale cress	nucleus	79.47	82.76
AT5G02570.1	Thale cress	nucleus	72.19	82.58
VIT_06s0004g04250.t01	Wine grape	nucleus	80.79	82.43
PGSC0003DMT400070383	Potato	nucleus	77.48	82.39
Solyc06g005390.1.1	Tomato	nucleus	80.13	82.31
PGSC0003DMT400074994	Potato	nucleus	80.13	82.31
Bra002436.1-P	Field mustard	nucleus	76.82	82.27
Solyc11g066430.1.1	Tomato	nucleus	76.16	82.14
VIT_13s0019g05370.t01	Wine grape	nucleus	78.81	82.07
Bra002520.1-P	Field mustard	nucleus	81.46	82.0
PGSC0003DMT400070382	Potato	nucleus	78.15	81.94
AT3G53650.1	Thale cress	nucleus	74.83	81.88
KRH29833	Soybean	nucleus	77.48	81.82
GSMUA_Achr2P19080_001	Banana	nucleus	77.48	81.82
KRH29831	Soybean	nucleus	80.13	81.76
KRH29836	Soybean	nucleus	80.13	81.76
KRH29832	Soybean	nucleus	80.13	81.76
Solyc06g074790.1.1	Tomato	nucleus	76.82	81.69
PGSC0003DMT400060096	Potato	nucleus	79.47	81.63
VIT_06s0004g04230.t01	Wine grape	nucleus	78.81	81.51
AT3G45980.1	Thale cress	nucleus	80.79	81.33
AT5G59910.1	Thale cress	nucleus	80.79	81.33
KRH24833	Soybean	nucleus	80.13	81.21
KRH24831	Soybean	nucleus	80.13	81.21
Solyc11g007930.1.1	Tomato	nucleus	74.17	81.16
AT3G09480.1	Thale cress	nucleus	67.55	80.95
Solyc05g055440.1.1	Tomato	nucleus	78.81	80.95
AT5G22880.1	Thale cress	nucleus	77.48	80.69
Solyc11g007920.1.1	Tomato	nucleus	76.82	80.56
PGSC0003DMT400022099	Potato	nucleus	76.82	80.56
PGSC0003DMT400022074	Potato	nucleus	76.82	80.56
KRH24830	Soybean	nucleus	79.47	80.54
AT1G07790.1	Thale cress	nucleus	78.81	80.41
PGSC0003DMT400001108	Potato	nucleus	75.5	80.28
Bra020275.1-P	Field mustard	nucleus	75.5	80.28
PGSC0003DMT400018456	Potato	nucleus	75.5	80.28
AT2G28720.1	Thale cress	nucleus	80.13	80.13
Bra006639.1-P	Field mustard	nucleus	76.16	79.86
Solyc12g013510.1.1	Tomato	nucleus	73.51	79.86
Solyc02g038690.1.1	Tomato	nucleus	70.86	79.85
Solyc06g074780.1.1	Tomato	nucleus	75.5	79.72
Bra035677.1-P	Field mustard	nucleus	78.15	79.19
Bra011930.1-P	Field mustard	nucleus	78.15	79.19
PGSC0003DMT400018455	Potato	nucleus	74.17	78.32
VIT_06s0004g04300.t01	Wine grape	nucleus	78.81	78.29
GSMUA_Achr7P15260_001	Banana	nucleus	77.48	76.97
Bra000483.1-P	Field mustard	nucleus	78.81	76.77
PGSC0003DMT400074020	Potato	nucleus	63.58	71.11
CDX71015	Canola	nucleus	29.14	66.67
Solyc10g044580.1.1	Tomato	nucleus	54.97	61.48
Zm00001d048491_P001	Maize	plastid	92.72	58.82
VIT_06s0004g04240.t01	Wine grape	nucleus	79.47	52.17
GSMUA_Achr6P33320_001	Banana	nucleus	68.21	49.76
Zm00001d005322_P001	Maize	nucleus	40.4	23.28
PGSC0003DMT400074018	Potato	nucleus	55.63	22.05

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100273030	MapMan:12.1.3	UniProt:B4FSE9	EMBL:BT040037	EMBL:EU952998
EMBL:EU958862	EMBL:EU958913	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
ProteinID:ONM55154.1	UniProt:P30755	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428
PANTHER:PTHR23428:SF72	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000012BF8A	EMBL:X57312	EnsemblPlantsGene:Zm00001d020580
EnsemblPlants:Zm00001d020580_P001	EnsemblPlants:Zm00001d020580_T001	SEG:seg	:	:	:

Description

histone2b1Histone H2B.1

Coordinates

chr7:+:123664001..123664456

Molecular Weight (calculated)

16421.1 Da

IEP (calculated)

10.743

GRAVY (calculated)

-0.723

Length

151 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AKKPAEEEPA TEKVEKAPAG KKPKAEKRLP AGKSKEGGEG KKGKKKAKKS VETYKIYIFK VLKQVHPDIG ISSKAMSIMN SFINDIFEKL
101: AAESAKLARY NKKPTITSRE IQTSVRLVLP GELAKHAVSE GTKAVTKFTS S

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.