Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15460 | Sorghum | nucleus | 61.34 | 96.05 |
| Zm00001d039821_P001 | Maize | plastid | 60.08 | 95.97 |
| Zm00001d012423_P001 | Maize | plastid | 55.04 | 95.62 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 26.47 | 95.45 |
| Zm00001d042930_P001 | Maize | plastid | 54.62 | 94.89 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 60.5 | 94.74 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 60.5 | 94.74 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 60.5 | 94.74 |
| Zm00001d007084_P001 | Maize | plastid | 60.5 | 94.74 |
| Zm00001d011236_P001 | Maize | plastid | 59.66 | 94.67 |
| Zm00001d032070_P001 | Maize | plastid | 59.66 | 94.67 |
| Zm00001d050100_P001 | Maize | plastid | 59.66 | 94.67 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 59.24 | 94.0 |
| Zm00001d025913_P001 | Maize | plastid | 59.24 | 94.0 |
| Zm00001d044247_P001 | Maize | plastid | 58.4 | 93.92 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 38.24 | 93.81 |
| Zm00001d005789_P001 | Maize | plastid | 59.66 | 93.42 |
| Os05t0460475-00 | Rice | nucleus | 41.6 | 93.4 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 59.24 | 93.38 |
| Zm00001d051591_P001 | Maize | plastid | 60.08 | 92.86 |
| Zm00001d020580_P001 | Maize | plastid | 58.82 | 92.72 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 37.4 | 92.71 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 37.4 | 92.71 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 37.4 | 92.71 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 45.38 | 92.31 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 58.82 | 92.11 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 52.52 | 91.91 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 52.52 | 91.91 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 52.52 | 91.91 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 36.97 | 91.67 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 54.62 | 91.55 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 54.62 | 91.55 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 54.62 | 91.55 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 53.78 | 91.43 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 53.36 | 91.37 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 52.94 | 91.3 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 54.2 | 90.85 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 52.52 | 90.58 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 52.52 | 90.58 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 52.52 | 90.58 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 52.52 | 90.58 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 52.52 | 90.58 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 51.26 | 90.37 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 51.26 | 90.37 |
| TraesCSU01G077200.1 | Wheat | nucleus | 51.26 | 90.37 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 38.66 | 90.2 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 57.56 | 90.13 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 57.56 | 90.13 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 52.1 | 89.86 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 52.1 | 89.86 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 51.26 | 89.71 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 51.26 | 89.71 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 51.26 | 89.71 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 51.26 | 89.71 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 50.84 | 89.63 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 50.84 | 89.63 |
| TraesCSU01G077400.1 | Wheat | nucleus | 50.84 | 89.63 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 51.68 | 89.13 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 51.68 | 89.13 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 50.84 | 88.97 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 50.84 | 88.97 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 50.42 | 88.89 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 50.42 | 88.89 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 58.4 | 88.53 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 51.68 | 88.49 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 51.26 | 88.41 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 50.0 | 88.15 |
| KRH26542 | Soybean | nucleus | 49.58 | 88.06 |
| KRH22818 | Soybean | nucleus | 49.16 | 87.97 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 50.84 | 87.05 |
| KRH19721 | Soybean | nucleus | 50.42 | 86.33 |
| PGSC0003DMT400077939 | Potato | nucleus | 52.94 | 86.3 |
| Bra007018.1-P | Field mustard | nucleus | 50.0 | 86.23 |
| Solyc06g075800.1.1 | Tomato | nucleus | 52.52 | 85.62 |
| AT2G37470.1 | Thale cress | nucleus | 49.58 | 85.51 |
| Bra039810.1-P | Field mustard | nucleus | 49.58 | 85.51 |
| KRG95819 | Soybean | nucleus | 49.58 | 85.51 |
| KRH67549 | Soybean | nucleus | 49.58 | 85.51 |
| KRH34681 | Soybean | nucleus | 49.16 | 85.4 |
| KRG92106 | Soybean | nucleus | 48.74 | 85.29 |
| PGSC0003DMT400043578 | Potato | nucleus | 50.42 | 85.11 |
| AT3G46030.1 | Thale cress | nucleus | 51.68 | 84.83 |
| AT5G59910.1 | Thale cress | nucleus | 53.36 | 84.67 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 50.84 | 84.62 |
| Solyc03g071620.1.1 | Tomato | nucleus | 50.0 | 84.4 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 51.68 | 84.25 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 55.46 | 84.08 |
| Bra003150.1-P | Field mustard | nucleus | 48.74 | 84.06 |
| PGSC0003DMT400070382 | Potato | nucleus | 50.84 | 84.03 |
| Bra002520.1-P | Field mustard | nucleus | 52.94 | 84.0 |
| Bra038267.1-P | Field mustard | nucleus | 48.32 | 83.94 |
| Bra020275.1-P | Field mustard | nucleus | 50.0 | 83.8 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 60.5 | 83.72 |
| Bra006685.1-P | Field mustard | nucleus | 49.58 | 83.69 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 50.84 | 83.45 |
| AT2G28720.1 | Thale cress | nucleus | 52.94 | 83.44 |
| AT3G45980.1 | Thale cress | nucleus | 52.52 | 83.33 |
| AT3G53650.1 | Thale cress | nucleus | 48.32 | 83.33 |
| AT5G02570.1 | Thale cress | nucleus | 46.22 | 83.33 |
| KRH29833 | Soybean | nucleus | 50.0 | 83.22 |
| KRH29831 | Soybean | nucleus | 51.68 | 83.11 |
| KRH29832 | Soybean | nucleus | 51.68 | 83.11 |
| KRH29836 | Soybean | nucleus | 51.68 | 83.11 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 51.68 | 83.11 |
| PGSC0003DMT400070383 | Potato | nucleus | 49.58 | 83.1 |
| PGSC0003DMT400074994 | Potato | nucleus | 51.26 | 82.99 |
| Solyc06g005390.1.1 | Tomato | nucleus | 51.26 | 82.99 |
| Bra002436.1-P | Field mustard | nucleus | 49.16 | 82.98 |
| Solyc11g066430.1.1 | Tomato | nucleus | 48.74 | 82.86 |
| Solyc11g007920.1.1 | Tomato | nucleus | 50.0 | 82.64 |
| KRH24831 | Soybean | nucleus | 51.68 | 82.55 |
| KRH24833 | Soybean | nucleus | 51.68 | 82.55 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 42.44 | 82.11 |
| PGSC0003DMT400022074 | Potato | nucleus | 49.58 | 81.94 |
| PGSC0003DMT400022099 | Potato | nucleus | 49.58 | 81.94 |
| Solyc11g007930.1.1 | Tomato | nucleus | 47.48 | 81.88 |
| Bra011930.1-P | Field mustard | nucleus | 51.26 | 81.88 |
| Bra035677.1-P | Field mustard | nucleus | 51.26 | 81.88 |
| KRH24830 | Soybean | nucleus | 51.26 | 81.88 |
| Solyc06g074790.1.1 | Tomato | nucleus | 48.74 | 81.69 |
| PGSC0003DMT400060096 | Potato | nucleus | 50.42 | 81.63 |
| AT5G22880.1 | Thale cress | nucleus | 49.58 | 81.38 |
| Bra006639.1-P | Field mustard | nucleus | 49.16 | 81.25 |
| AT1G07790.1 | Thale cress | nucleus | 50.42 | 81.08 |
| PGSC0003DMT400001108 | Potato | nucleus | 48.32 | 80.99 |
| AT3G09480.1 | Thale cress | nucleus | 42.86 | 80.95 |
| Solyc05g055440.1.1 | Tomato | nucleus | 50.0 | 80.95 |
| Solyc02g038690.1.1 | Tomato | nucleus | 45.38 | 80.6 |
| Solyc12g013510.1.1 | Tomato | nucleus | 47.06 | 80.58 |
| PGSC0003DMT400018456 | Potato | nucleus | 47.9 | 80.28 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 51.26 | 80.26 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 52.1 | 80.0 |
| PGSC0003DMT400018455 | Potato | nucleus | 47.9 | 79.72 |
| Solyc06g074780.1.1 | Tomato | nucleus | 47.9 | 79.72 |
| Bra000483.1-P | Field mustard | nucleus | 51.68 | 79.35 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 52.52 | 78.62 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 44.12 | 78.36 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 53.36 | 77.91 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 49.58 | 77.63 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 53.36 | 77.44 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 52.94 | 77.3 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 37.82 | 76.27 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 52.52 | 76.22 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 50.0 | 75.8 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 37.82 | 75.63 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 51.68 | 74.1 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 53.78 | 73.99 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 40.34 | 72.73 |
| PGSC0003DMT400074020 | Potato | nucleus | 41.18 | 72.59 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 51.68 | 72.35 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 63.03 | 70.75 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 34.03 | 69.23 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 49.58 | 69.01 |
| CDX71015 | Canola | nucleus | 18.49 | 66.67 |
| Solyc10g044580.1.1 | Tomato | nucleus | 35.71 | 62.96 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 46.64 | 60.33 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 55.46 | 57.39 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 49.16 | 55.71 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 46.22 | 53.14 |
| PGSC0003DMT400074018 | Potato | nucleus | 39.92 | 24.93 |
| Zm00001d005322_P001 | Maize | nucleus | 25.63 | 23.28 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | UniProt:A0A1D6PKZ8 | ProteinID:AQL09913.1 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 |
| PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI0008456016 | EnsemblPlantsGene:Zm00001d048491 | EnsemblPlants:Zm00001d048491_P001 |
| EnsemblPlants:Zm00001d048491_T001 | SEG:seg | : | : | : | : |
Description
Histone H2B
Coordinates
chr9:-:157090097..157090813
Molecular Weight (calculated)
25672.0 Da
IEP (calculated)
11.187
GRAVY (calculated)
-0.738
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPTSTTSA IRIASVVRNG RTPSNSSTSA IRVAYPPTNG VQPPALYKVA PPAAFFRTQQ QATSSPNKQP PPPRSRREEA QSRNRRPIPM APKAEKKPAA
101: KKPAEEEPAA EKATAGKKPK AEKRLPAGKS AGKEGGEKKG KKKAKKSVET YKIYIFKVLK QVHPDIGISS KAMSIMNSFI NDIFEKLAAE AAKLARYNKK
201: PTITSREIQT SVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: KKPAEEEPAA EKATAGKKPK AEKRLPAGKS AGKEGGEKKG KKKAKKSVET YKIYIFKVLK QVHPDIGISS KAMSIMNSFI NDIFEKLAAE AAKLARYNKK
201: PTITSREIQT SVRLVLPGEL AKHAVSEGTK AVTKFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.