Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G046500.1 | Wheat | nucleus | 40.76 | 96.97 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 57.32 | 92.78 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 88.53 | 91.45 |
| EES00304 | Sorghum | nucleus | 85.35 | 89.93 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 86.62 | 89.47 |
| EES00305 | Sorghum | nucleus | 84.71 | 89.26 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 66.24 | 88.89 |
| EES15460 | Sorghum | nucleus | 85.99 | 88.82 |
| EES00399 | Sorghum | nucleus | 84.71 | 88.67 |
| Zm00001d039821_P001 | Maize | plastid | 84.08 | 88.59 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 76.43 | 88.24 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 76.43 | 88.24 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 85.35 | 88.16 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 85.35 | 88.16 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 84.71 | 88.08 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 77.07 | 87.68 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 85.35 | 87.58 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 78.34 | 86.62 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 74.52 | 86.03 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 74.52 | 86.03 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 85.99 | 85.99 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 75.8 | 85.61 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 73.89 | 85.29 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 73.25 | 84.56 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 76.43 | 84.51 |
| KRH26542 | Soybean | nucleus | 71.97 | 84.33 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 75.16 | 84.29 |
| KRH22818 | Soybean | nucleus | 71.34 | 84.21 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 75.8 | 83.8 |
| KRH19721 | Soybean | nucleus | 72.61 | 82.01 |
| Bra006685.1-P | Field mustard | nucleus | 73.25 | 81.56 |
| PGSC0003DMT400043578 | Potato | nucleus | 73.25 | 81.56 |
| Bra007018.1-P | Field mustard | nucleus | 71.34 | 81.16 |
| KRG95819 | Soybean | nucleus | 71.34 | 81.16 |
| KRH67549 | Soybean | nucleus | 71.34 | 81.16 |
| Solyc03g071620.1.1 | Tomato | nucleus | 72.61 | 80.85 |
| PGSC0003DMT400077939 | Potato | nucleus | 75.16 | 80.82 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 74.52 | 80.69 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 74.52 | 80.69 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 77.07 | 80.67 |
| Bra039810.1-P | Field mustard | nucleus | 70.7 | 80.43 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 73.25 | 80.42 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 75.8 | 80.41 |
| AT5G02570.1 | Thale cress | nucleus | 67.52 | 80.3 |
| Bra038267.1-P | Field mustard | nucleus | 70.06 | 80.29 |
| KRH34681 | Soybean | nucleus | 70.06 | 80.29 |
| KRG92106 | Soybean | nucleus | 69.43 | 80.15 |
| Solyc06g075800.1.1 | Tomato | nucleus | 74.52 | 80.14 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 74.52 | 80.14 |
| AT3G46030.1 | Thale cress | nucleus | 73.89 | 80.0 |
| AT5G59910.1 | Thale cress | nucleus | 76.43 | 80.0 |
| Bra002520.1-P | Field mustard | nucleus | 76.43 | 80.0 |
| PGSC0003DMT400070382 | Potato | nucleus | 73.25 | 79.86 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 77.71 | 79.74 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 77.71 | 79.74 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 77.71 | 79.74 |
| AT2G37470.1 | Thale cress | nucleus | 70.06 | 79.71 |
| Solyc11g007930.1.1 | Tomato | nucleus | 70.06 | 79.71 |
| PGSC0003DMT400074994 | Potato | nucleus | 74.52 | 79.59 |
| Solyc06g005390.1.1 | Tomato | nucleus | 74.52 | 79.59 |
| Bra020275.1-P | Field mustard | nucleus | 71.97 | 79.58 |
| PGSC0003DMT400070383 | Potato | nucleus | 71.97 | 79.58 |
| Bra002436.1-P | Field mustard | nucleus | 71.34 | 79.43 |
| AT3G45980.1 | Thale cress | nucleus | 75.8 | 79.33 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 73.25 | 79.31 |
| Solyc11g007920.1.1 | Tomato | nucleus | 72.61 | 79.17 |
| AT3G53650.1 | Thale cress | nucleus | 69.43 | 78.99 |
| Bra003150.1-P | Field mustard | nucleus | 69.43 | 78.99 |
| AT5G22880.1 | Thale cress | nucleus | 72.61 | 78.62 |
| AT3G09480.1 | Thale cress | nucleus | 63.06 | 78.57 |
| PGSC0003DMT400022074 | Potato | nucleus | 71.97 | 78.47 |
| PGSC0003DMT400022099 | Potato | nucleus | 71.97 | 78.47 |
| AT1G07790.1 | Thale cress | nucleus | 73.89 | 78.38 |
| KRH29831 | Soybean | nucleus | 73.89 | 78.38 |
| KRH29832 | Soybean | nucleus | 73.89 | 78.38 |
| KRH29836 | Soybean | nucleus | 73.89 | 78.38 |
| KRH29833 | Soybean | nucleus | 71.34 | 78.32 |
| PGSC0003DMT400060096 | Potato | nucleus | 73.25 | 78.23 |
| AT2G28720.1 | Thale cress | nucleus | 75.16 | 78.15 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 61.15 | 78.05 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 76.43 | 77.92 |
| Solyc11g066430.1.1 | Tomato | nucleus | 69.43 | 77.86 |
| Bra011930.1-P | Field mustard | nucleus | 73.89 | 77.85 |
| Bra035677.1-P | Field mustard | nucleus | 73.89 | 77.85 |
| KRH24831 | Soybean | nucleus | 73.89 | 77.85 |
| KRH24833 | Soybean | nucleus | 73.89 | 77.85 |
| Bra006639.1-P | Field mustard | nucleus | 71.34 | 77.78 |
| Solyc12g013510.1.1 | Tomato | nucleus | 68.79 | 77.7 |
| Solyc05g055440.1.1 | Tomato | nucleus | 72.61 | 77.55 |
| Solyc06g074790.1.1 | Tomato | nucleus | 70.06 | 77.46 |
| KRH24830 | Soybean | nucleus | 73.25 | 77.18 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 74.52 | 76.97 |
| Solyc02g038690.1.1 | Tomato | nucleus | 65.61 | 76.87 |
| PGSC0003DMT400018455 | Potato | nucleus | 69.43 | 76.22 |
| PGSC0003DMT400001108 | Potato | nucleus | 68.79 | 76.06 |
| PGSC0003DMT400018456 | Potato | nucleus | 68.79 | 76.06 |
| Solyc06g074780.1.1 | Tomato | nucleus | 68.79 | 75.52 |
| Bra000483.1-P | Field mustard | nucleus | 74.52 | 75.48 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 77.07 | 73.78 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 71.34 | 73.68 |
| PGSC0003DMT400074020 | Potato | nucleus | 61.78 | 71.85 |
| CDX71015 | Canola | nucleus | 26.75 | 63.64 |
| Solyc10g044580.1.1 | Tomato | nucleus | 52.87 | 61.48 |
| Zm00001d048491_P001 | Maize | plastid | 84.08 | 55.46 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 75.8 | 51.74 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 64.33 | 48.79 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 56.69 | 44.95 |
| PGSC0003DMT400074018 | Potato | nucleus | 52.23 | 21.52 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF175 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS1D01G232900 |
| EnsemblPlants:TraesCS1D01G232900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:321322436..321330536
Molecular Weight (calculated)
17081.9 Da
IEP (calculated)
10.795
GRAVY (calculated)
-0.727
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPQAEKKLV AKKPAEEEPT TEKAEKAPTA KKPKAEKRLP AGKKGRKKGK KSGEGSVKGS EKGKKSVETY KIYIFKVLKQ VHPDIGISSK AMSIMNSFIN
101: DIFEKLAGEA AKLARYNKKP TITSREIQTS VRLVLPGELA KHAVSEGTKA VTKFTSS
101: DIFEKLAGEA AKLARYNKKP TITSREIQTS VRLVLPGELA KHAVSEGTKA VTKFTSS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.