Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71015 | Canola | nucleus | 60.61 | 60.61 |
| Os05t0460475-00 | Rice | nucleus | 92.42 | 57.55 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 92.42 | 52.14 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 98.48 | 47.79 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 98.48 | 47.1 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 96.97 | 47.06 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 96.97 | 47.06 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 96.97 | 47.06 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 96.97 | 47.06 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 96.97 | 47.06 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 98.48 | 46.43 |
| AT3G09480.1 | Thale cress | nucleus | 87.88 | 46.03 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 98.48 | 45.77 |
| Solyc02g038690.1.1 | Tomato | nucleus | 92.42 | 45.52 |
| AT5G02570.1 | Thale cress | nucleus | 90.91 | 45.45 |
| KRH22818 | Soybean | nucleus | 90.91 | 45.11 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 96.97 | 45.07 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 98.48 | 44.83 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 98.48 | 44.83 |
| KRH26542 | Soybean | nucleus | 90.91 | 44.78 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 83.33 | 44.72 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 93.94 | 44.6 |
| Bra038267.1-P | Field mustard | nucleus | 92.42 | 44.53 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 95.45 | 44.37 |
| Solyc11g007930.1.1 | Tomato | nucleus | 92.42 | 44.2 |
| Bra002436.1-P | Field mustard | nucleus | 93.94 | 43.97 |
| Bra006685.1-P | Field mustard | nucleus | 93.94 | 43.97 |
| KRH34681 | Soybean | nucleus | 90.91 | 43.8 |
| AT2G37470.1 | Thale cress | nucleus | 90.91 | 43.48 |
| Bra007018.1-P | Field mustard | nucleus | 90.91 | 43.48 |
| Bra039810.1-P | Field mustard | nucleus | 90.91 | 43.48 |
| KRG95819 | Soybean | nucleus | 90.91 | 43.48 |
| KRH67549 | Soybean | nucleus | 90.91 | 43.48 |
| KRG92106 | Soybean | nucleus | 89.39 | 43.38 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 93.94 | 43.36 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 98.48 | 43.33 |
| Solyc12g013510.1.1 | Tomato | nucleus | 90.91 | 43.17 |
| Bra006639.1-P | Field mustard | nucleus | 93.94 | 43.06 |
| Bra020275.1-P | Field mustard | nucleus | 92.42 | 42.96 |
| PGSC0003DMT400070383 | Potato | nucleus | 92.42 | 42.96 |
| EES00304 | Sorghum | nucleus | 96.97 | 42.95 |
| EES00305 | Sorghum | nucleus | 96.97 | 42.95 |
| Zm00001d039821_P001 | Maize | plastid | 96.97 | 42.95 |
| AT5G22880.1 | Thale cress | nucleus | 93.94 | 42.76 |
| AT3G53650.1 | Thale cress | nucleus | 89.39 | 42.75 |
| Bra003150.1-P | Field mustard | nucleus | 89.39 | 42.75 |
| PGSC0003DMT400043578 | Potato | nucleus | 90.91 | 42.55 |
| Solyc03g071620.1.1 | Tomato | nucleus | 90.91 | 42.55 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 98.48 | 42.48 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 98.48 | 42.48 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 98.48 | 42.48 |
| KRH19721 | Soybean | nucleus | 89.39 | 42.45 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 98.48 | 42.21 |
| Solyc11g066430.1.1 | Tomato | nucleus | 89.39 | 42.14 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 96.97 | 42.11 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 96.97 | 42.11 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 96.97 | 42.11 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 96.97 | 42.11 |
| AT3G46030.1 | Thale cress | nucleus | 92.42 | 42.07 |
| EES00399 | Sorghum | nucleus | 95.45 | 42.0 |
| KRH29833 | Soybean | nucleus | 90.91 | 41.96 |
| PGSC0003DMT400022074 | Potato | nucleus | 90.91 | 41.67 |
| PGSC0003DMT400022099 | Potato | nucleus | 90.91 | 41.67 |
| PGSC0003DMT400001108 | Potato | nucleus | 89.39 | 41.55 |
| PGSC0003DMT400074994 | Potato | nucleus | 92.42 | 41.5 |
| Solyc06g005390.1.1 | Tomato | nucleus | 92.42 | 41.5 |
| EES15460 | Sorghum | nucleus | 95.45 | 41.45 |
| Bra002520.1-P | Field mustard | nucleus | 93.94 | 41.33 |
| AT1G07790.1 | Thale cress | nucleus | 92.42 | 41.22 |
| PGSC0003DMT400077939 | Potato | nucleus | 90.91 | 41.1 |
| Solyc06g075800.1.1 | Tomato | nucleus | 90.91 | 41.1 |
| PGSC0003DMT400070382 | Potato | nucleus | 89.39 | 40.97 |
| Solyc11g007920.1.1 | Tomato | nucleus | 89.39 | 40.97 |
| PGSC0003DMT400018456 | Potato | nucleus | 87.88 | 40.85 |
| Solyc06g074790.1.1 | Tomato | nucleus | 87.88 | 40.85 |
| PGSC0003DMT400060096 | Potato | nucleus | 90.91 | 40.82 |
| Solyc05g055440.1.1 | Tomato | nucleus | 90.91 | 40.82 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 96.97 | 40.76 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 96.97 | 40.76 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 89.39 | 40.69 |
| AT3G45980.1 | Thale cress | nucleus | 92.42 | 40.67 |
| KRH29831 | Soybean | nucleus | 90.91 | 40.54 |
| KRH29832 | Soybean | nucleus | 90.91 | 40.54 |
| KRH29836 | Soybean | nucleus | 90.91 | 40.54 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 90.91 | 40.54 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 93.94 | 40.52 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 89.39 | 40.41 |
| Bra011930.1-P | Field mustard | nucleus | 90.91 | 40.27 |
| Bra035677.1-P | Field mustard | nucleus | 90.91 | 40.27 |
| KRH24830 | Soybean | nucleus | 90.91 | 40.27 |
| KRH24831 | Soybean | nucleus | 90.91 | 40.27 |
| KRH24833 | Soybean | nucleus | 90.91 | 40.27 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 92.42 | 40.13 |
| AT5G59910.1 | Thale cress | nucleus | 90.91 | 40.0 |
| PGSC0003DMT400074020 | Potato | nucleus | 81.82 | 40.0 |
| PGSC0003DMT400018455 | Potato | nucleus | 86.36 | 39.86 |
| Solyc06g074780.1.1 | Tomato | nucleus | 86.36 | 39.86 |
| AT2G28720.1 | Thale cress | nucleus | 90.91 | 39.74 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 89.39 | 38.82 |
| Bra000483.1-P | Field mustard | nucleus | 90.91 | 38.71 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 95.45 | 36.84 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 87.88 | 35.37 |
| Solyc10g044580.1.1 | Tomato | nucleus | 68.18 | 33.33 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 92.42 | 29.47 |
| Zm00001d048491_P001 | Maize | plastid | 95.45 | 26.47 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 89.39 | 25.65 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 60.61 | 20.2 |
| PGSC0003DMT400074018 | Potato | nucleus | 62.12 | 10.76 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6D01G046500 |
| EnsemblPlants:TraesCS6D01G046500.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:20818239..20818439
Molecular Weight (calculated)
7270.9 Da
IEP (calculated)
10.483
GRAVY (calculated)
-0.176
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MSIMNSFIND IFEKLVGESA KLARYNKKPT ITSREIQTSV RLVLPGELAK HAVSEGTKAV TKFTSS
001: MAKADKKPAE KKPAEKTPAA EPAAAAEKKP KAGKKLPKEP AGAGDKKKKR SKKNVETYKI YIFKVLKQVH PDIGISSKAM GIMNSFINDI FEKLAGESSK
101: LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
101: LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.