Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G046500.1 | Wheat | nucleus | 44.83 | 98.48 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 96.55 | 97.22 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 95.17 | 95.83 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 95.17 | 95.17 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 86.21 | 90.58 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 84.83 | 90.44 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 84.83 | 90.44 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 84.14 | 89.71 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 84.14 | 89.71 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 92.41 | 89.33 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 85.52 | 88.57 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 86.21 | 88.03 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 93.1 | 87.66 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 92.41 | 87.58 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 85.52 | 87.32 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 70.34 | 87.18 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 91.72 | 86.93 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 91.72 | 86.93 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 82.76 | 86.33 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 80.0 | 85.29 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 80.0 | 85.29 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 82.07 | 83.8 |
| KRH22818 | Soybean | nucleus | 75.17 | 81.95 |
| Zm00001d007084_P001 | Maize | plastid | 85.52 | 81.58 |
| KRH26542 | Soybean | nucleus | 75.17 | 81.34 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 68.97 | 81.3 |
| KRG95819 | Soybean | nucleus | 77.24 | 81.16 |
| KRH67549 | Soybean | nucleus | 77.24 | 81.16 |
| Bra038267.1-P | Field mustard | nucleus | 76.55 | 81.02 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 84.83 | 80.92 |
| AT2G37470.1 | Thale cress | nucleus | 76.55 | 80.43 |
| Bra007018.1-P | Field mustard | nucleus | 76.55 | 80.43 |
| Bra039810.1-P | Field mustard | nucleus | 76.55 | 80.43 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 84.14 | 80.26 |
| Zm00001d051591_P001 | Maize | plastid | 84.83 | 79.87 |
| KRH19721 | Soybean | nucleus | 76.55 | 79.86 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 83.45 | 79.61 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 83.45 | 79.61 |
| KRG92106 | Soybean | nucleus | 74.48 | 79.41 |
| AT3G53650.1 | Thale cress | nucleus | 75.17 | 78.99 |
| Bra003150.1-P | Field mustard | nucleus | 75.17 | 78.99 |
| KRH34681 | Soybean | nucleus | 74.48 | 78.83 |
| AT5G02570.1 | Thale cress | nucleus | 71.72 | 78.79 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 77.24 | 78.32 |
| KRH29833 | Soybean | nucleus | 77.24 | 78.32 |
| PGSC0003DMT400043578 | Potato | nucleus | 75.86 | 78.01 |
| Solyc03g071620.1.1 | Tomato | nucleus | 75.86 | 78.01 |
| AT3G46030.1 | Thale cress | nucleus | 77.93 | 77.93 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 82.07 | 77.78 |
| PGSC0003DMT400077939 | Potato | nucleus | 77.93 | 77.4 |
| Solyc06g075800.1.1 | Tomato | nucleus | 77.93 | 77.4 |
| Bra006685.1-P | Field mustard | nucleus | 75.17 | 77.31 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 83.45 | 77.07 |
| AT3G09480.1 | Thale cress | nucleus | 66.9 | 76.98 |
| Bra020275.1-P | Field mustard | nucleus | 75.17 | 76.76 |
| PGSC0003DMT400070383 | Potato | nucleus | 75.17 | 76.76 |
| AT5G22880.1 | Thale cress | nucleus | 76.55 | 76.55 |
| Solyc02g038690.1.1 | Tomato | nucleus | 70.34 | 76.12 |
| Solyc11g007930.1.1 | Tomato | nucleus | 72.41 | 76.09 |
| Bra002520.1-P | Field mustard | nucleus | 78.62 | 76.0 |
| Bra002436.1-P | Field mustard | nucleus | 73.79 | 75.89 |
| Solyc11g066430.1.1 | Tomato | nucleus | 73.1 | 75.71 |
| Bra006639.1-P | Field mustard | nucleus | 75.17 | 75.69 |
| PGSC0003DMT400070382 | Potato | nucleus | 75.17 | 75.69 |
| KRH29831 | Soybean | nucleus | 77.24 | 75.68 |
| KRH29832 | Soybean | nucleus | 77.24 | 75.68 |
| KRH29836 | Soybean | nucleus | 77.24 | 75.68 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 77.24 | 75.68 |
| PGSC0003DMT400074994 | Potato | nucleus | 76.55 | 75.51 |
| Solyc06g005390.1.1 | Tomato | nucleus | 76.55 | 75.51 |
| Solyc06g074790.1.1 | Tomato | nucleus | 73.79 | 75.35 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 75.86 | 75.34 |
| KRH24830 | Soybean | nucleus | 77.24 | 75.17 |
| KRH24831 | Soybean | nucleus | 77.24 | 75.17 |
| KRH24833 | Soybean | nucleus | 77.24 | 75.17 |
| AT1G07790.1 | Thale cress | nucleus | 76.55 | 75.0 |
| Solyc11g007920.1.1 | Tomato | nucleus | 74.48 | 75.0 |
| PGSC0003DMT400060096 | Potato | nucleus | 75.86 | 74.83 |
| Solyc05g055440.1.1 | Tomato | nucleus | 75.86 | 74.83 |
| AT3G45980.1 | Thale cress | nucleus | 77.24 | 74.67 |
| AT5G59910.1 | Thale cress | nucleus | 77.24 | 74.67 |
| PGSC0003DMT400001108 | Potato | nucleus | 73.1 | 74.65 |
| PGSC0003DMT400018456 | Potato | nucleus | 73.1 | 74.65 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 80.69 | 74.52 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 74.48 | 74.48 |
| PGSC0003DMT400022074 | Potato | nucleus | 73.79 | 74.31 |
| PGSC0003DMT400022099 | Potato | nucleus | 73.79 | 74.31 |
| Solyc12g013510.1.1 | Tomato | nucleus | 71.03 | 74.1 |
| AT2G28720.1 | Thale cress | nucleus | 76.55 | 73.51 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 91.03 | 73.33 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 91.03 | 73.33 |
| Bra035677.1-P | Field mustard | nucleus | 75.17 | 73.15 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 76.55 | 73.03 |
| Bra011930.1-P | Field mustard | nucleus | 74.48 | 72.48 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 75.86 | 72.37 |
| PGSC0003DMT400018455 | Potato | nucleus | 71.03 | 72.03 |
| Solyc06g074780.1.1 | Tomato | nucleus | 71.03 | 72.03 |
| Bra000483.1-P | Field mustard | nucleus | 75.17 | 70.32 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 77.24 | 68.29 |
| PGSC0003DMT400074020 | Potato | nucleus | 62.76 | 67.41 |
| CDX71015 | Canola | nucleus | 30.34 | 66.67 |
| Solyc10g044580.1.1 | Tomato | nucleus | 55.86 | 60.0 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 75.86 | 47.83 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 67.59 | 47.34 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 57.93 | 42.42 |
| PGSC0003DMT400074018 | Potato | nucleus | 54.48 | 20.73 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF62 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6D01G040600 |
| EnsemblPlants:TraesCS6D01G040600.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:16514601..16515221
Molecular Weight (calculated)
15603.1 Da
IEP (calculated)
10.949
GRAVY (calculated)
-0.601
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAAEKKL APATAEKTTA GKKPKAEKRA PATKEAGGEG KTRGRKKGSK AKKGVETYKI YIFKVLKQVH PDVGISSKAM SIMNSFINDI FEKLAGESAK
101: LARYNKKPTI TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS
101: LARYNKKPTI TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.