Subcellular Localization
min:
: max
Winner_takes_all: unclear, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G376900.1 | Wheat | nucleus | 98.05 | 99.34 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 42.21 | 98.48 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 96.75 | 97.39 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 96.1 | 96.73 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 96.1 | 96.73 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 94.16 | 96.67 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 88.31 | 93.79 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 87.66 | 93.1 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 83.77 | 92.14 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 80.52 | 91.18 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 79.87 | 90.44 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 79.87 | 90.44 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 80.52 | 89.86 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 79.22 | 89.71 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 66.88 | 88.03 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 80.52 | 87.32 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 80.52 | 87.32 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 79.87 | 86.62 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 85.06 | 86.18 |
| Zm00001d007084_P001 | Maize | plastid | 85.06 | 86.18 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 75.97 | 86.03 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 75.97 | 86.03 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 77.27 | 85.61 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 83.77 | 84.87 |
| Zm00001d051591_P001 | Maize | plastid | 84.42 | 84.42 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 83.12 | 84.21 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 83.12 | 84.21 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 82.47 | 83.01 |
| KRH26542 | Soybean | nucleus | 71.43 | 82.09 |
| KRH22818 | Soybean | nucleus | 70.78 | 81.95 |
| AT2G37470.1 | Thale cress | nucleus | 73.38 | 81.88 |
| Bra038267.1-P | Field mustard | nucleus | 72.73 | 81.75 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 95.45 | 81.67 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 95.45 | 81.67 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 64.94 | 81.3 |
| KRG95819 | Soybean | nucleus | 72.73 | 81.16 |
| KRH67549 | Soybean | nucleus | 72.73 | 81.16 |
| KRH34681 | Soybean | nucleus | 72.08 | 81.02 |
| PGSC0003DMT400077939 | Potato | nucleus | 76.62 | 80.82 |
| Solyc06g075800.1.1 | Tomato | nucleus | 76.62 | 80.82 |
| Bra007018.1-P | Field mustard | nucleus | 72.08 | 80.43 |
| Bra039810.1-P | Field mustard | nucleus | 72.08 | 80.43 |
| KRG92106 | Soybean | nucleus | 70.78 | 80.15 |
| KRH19721 | Soybean | nucleus | 72.08 | 79.86 |
| KRH29833 | Soybean | nucleus | 74.03 | 79.72 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 81.17 | 79.62 |
| PGSC0003DMT400043578 | Potato | nucleus | 72.73 | 79.43 |
| Solyc03g071620.1.1 | Tomato | nucleus | 72.73 | 79.43 |
| AT3G46030.1 | Thale cress | nucleus | 74.68 | 79.31 |
| AT3G53650.1 | Thale cress | nucleus | 70.78 | 78.99 |
| Bra003150.1-P | Field mustard | nucleus | 70.78 | 78.99 |
| AT5G02570.1 | Thale cress | nucleus | 67.53 | 78.79 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 72.73 | 78.32 |
| Bra020275.1-P | Field mustard | nucleus | 72.08 | 78.17 |
| Solyc06g074790.1.1 | Tomato | nucleus | 72.08 | 78.17 |
| Bra006685.1-P | Field mustard | nucleus | 71.43 | 78.01 |
| Bra006639.1-P | Field mustard | nucleus | 72.73 | 77.78 |
| PGSC0003DMT400018456 | Potato | nucleus | 71.43 | 77.46 |
| PGSC0003DMT400070383 | Potato | nucleus | 71.43 | 77.46 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 73.38 | 77.4 |
| Bra002520.1-P | Field mustard | nucleus | 75.32 | 77.33 |
| Bra002436.1-P | Field mustard | nucleus | 70.78 | 77.31 |
| AT5G22880.1 | Thale cress | nucleus | 72.73 | 77.24 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 72.73 | 77.24 |
| PGSC0003DMT400070382 | Potato | nucleus | 72.08 | 77.08 |
| KRH29831 | Soybean | nucleus | 74.03 | 77.03 |
| KRH29832 | Soybean | nucleus | 74.03 | 77.03 |
| KRH29836 | Soybean | nucleus | 74.03 | 77.03 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 74.03 | 77.03 |
| AT3G09480.1 | Thale cress | nucleus | 62.99 | 76.98 |
| PGSC0003DMT400074994 | Potato | nucleus | 73.38 | 76.87 |
| Solyc06g005390.1.1 | Tomato | nucleus | 73.38 | 76.87 |
| Solyc11g007930.1.1 | Tomato | nucleus | 68.83 | 76.81 |
| KRH24830 | Soybean | nucleus | 74.03 | 76.51 |
| KRH24831 | Soybean | nucleus | 74.03 | 76.51 |
| KRH24833 | Soybean | nucleus | 74.03 | 76.51 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 77.92 | 76.43 |
| Solyc11g066430.1.1 | Tomato | nucleus | 69.48 | 76.43 |
| Solyc11g007920.1.1 | Tomato | nucleus | 71.43 | 76.39 |
| AT1G07790.1 | Thale cress | nucleus | 73.38 | 76.35 |
| PGSC0003DMT400060096 | Potato | nucleus | 72.73 | 76.19 |
| Solyc05g055440.1.1 | Tomato | nucleus | 72.73 | 76.19 |
| AT2G28720.1 | Thale cress | nucleus | 74.68 | 76.16 |
| Solyc02g038690.1.1 | Tomato | nucleus | 66.23 | 76.12 |
| AT3G45980.1 | Thale cress | nucleus | 74.03 | 76.0 |
| AT5G59910.1 | Thale cress | nucleus | 74.03 | 76.0 |
| PGSC0003DMT400001108 | Potato | nucleus | 69.48 | 75.35 |
| Bra035677.1-P | Field mustard | nucleus | 72.73 | 75.17 |
| PGSC0003DMT400022074 | Potato | nucleus | 70.13 | 75.0 |
| PGSC0003DMT400022099 | Potato | nucleus | 70.13 | 75.0 |
| PGSC0003DMT400018455 | Potato | nucleus | 69.48 | 74.83 |
| Solyc12g013510.1.1 | Tomato | nucleus | 67.53 | 74.82 |
| Bra011930.1-P | Field mustard | nucleus | 72.08 | 74.5 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 73.38 | 74.34 |
| Solyc06g074780.1.1 | Tomato | nucleus | 68.83 | 74.13 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 72.73 | 73.68 |
| Bra000483.1-P | Field mustard | nucleus | 72.73 | 72.26 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 75.32 | 70.73 |
| PGSC0003DMT400074020 | Potato | nucleus | 59.74 | 68.15 |
| CDX71015 | Canola | nucleus | 27.92 | 65.15 |
| Solyc10g044580.1.1 | Tomato | nucleus | 51.95 | 59.26 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 73.38 | 49.13 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 64.29 | 47.83 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 54.55 | 42.42 |
| PGSC0003DMT400074018 | Potato | nucleus | 52.6 | 21.26 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6D01G326800 |
| EnsemblPlants:TraesCS6D01G326800.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:431856387..431856851
Molecular Weight (calculated)
16484.1 Da
IEP (calculated)
10.906
GRAVY (calculated)
-0.658
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKADKKPA AESKVEKAAE KTPAGKKPKA EKRVPAGKTA AKEGAGGEGK TRGRKKGSKA KKGVETYKIY IFKVLKQVHP DVGISSKAMS IMNSFINDIF
101: EKLAGESAKL ARYNKKPTIT SREIQTSVRL VLPGELAKHA VSEGTKAVTK FTSS
101: EKLAGESAKL ARYNKKPTIT SREIQTSVRL VLPGELAKHA VSEGTKAVTK FTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.