CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22818	Soybean	nucleus	97.76	98.5
GSMUA_Achr8P20900_001	Banana	nucleus	47.01	95.45
GSMUA_Achr10P...	Banana	nucleus	45.52	92.42
KRH19721	Soybean	nucleus	94.78	91.37
TraesCS6D01G046500.1	Wheat	nucleus	44.78	90.91
KRG95819	Soybean	nucleus	93.28	90.58
KRH67549	Soybean	nucleus	93.28	90.58
KRG92106	Soybean	nucleus	91.04	89.71
KRH34681	Soybean	nucleus	91.04	89.05
Os05t0460475-00	Rice	nucleus	70.15	88.68
GSMUA_Achr9P04060_001	Banana	nucleus	76.87	88.03
Os01t0839500-00	Rice	nucleus	89.55	86.33
TraesCS2A01G312400.1	Wheat	nucleus	75.37	85.59
TraesCS6B01G055300.1	Wheat	nucleus	61.19	85.42
TraesCS6B01G055500.1	Wheat	nucleus	61.19	85.42
TraesCS3A01G357500.1	Wheat	nucleus	85.82	84.56
TraesCS3D01G351300.1	Wheat	nucleus	85.82	84.56
TraesCS3D01G351400.1	Wheat	nucleus	85.82	84.56
TraesCS7B01G394800.1	Wheat	nucleus	61.19	84.54
KRH29831	Soybean	nucleus	93.28	84.46
KRH29832	Soybean	nucleus	93.28	84.46
KRH29836	Soybean	nucleus	93.28	84.46
TraesCS3A01G075800.1	Wheat	nucleus	60.45	84.38
EES03855	Sorghum	nucleus	85.82	83.94
Zm00001d012423_P001	Maize	plastid	85.82	83.94
KRH29833	Soybean	nucleus	89.55	83.92
KRH24831	Soybean	nucleus	93.28	83.89
KRH24833	Soybean	nucleus	93.28	83.89
TraesCS3B01G390000.1	Wheat	nucleus	85.07	83.82
TraesCS3D01G099000.1	Wheat	nucleus	85.07	83.82
HORVU6Hr1G015790.1	Barley	nucleus	84.33	83.7
TraesCS3B01G390100.1	Wheat	nucleus	84.33	83.7
TraesCS3A01G357400.1	Wheat	nucleus	85.82	83.33
KRH24830	Soybean	nucleus	92.54	83.22
Zm00001d042930_P001	Maize	plastid	85.07	83.21
TraesCS3B01G114400.1	Wheat	nucleus	83.58	82.96
TraesCS3B01G114600.1	Wheat	nucleus	83.58	82.96
TraesCS6A01G086400.1	Wheat	nucleus	83.58	82.96
TraesCS6B01G116000.1	Wheat	nucleus	83.58	82.96
TraesCSU01G077200.1	Wheat	nucleus	83.58	82.96
TraesCS6D01G046600.1	Wheat	nucleus	83.58	82.35
TraesCS6A01G086200.1	Wheat	nucleus	82.84	82.22
TraesCSU01G077400.1	Wheat	nucleus	82.84	82.22
TraesCS1B01G294500.1	Wheat	nucleus	90.3	81.76
EES18353	Sorghum	nucleus	89.55	81.63
TraesCS3D01G075900.1	Wheat	nucleus	82.84	81.62
TraesCS7B01G394500.1	Wheat	nucleus	58.21	81.25
TraesCS6A01G040500.1	Wheat	nucleus	82.09	80.88
TraesCS6D01G046200.1	Wheat	nucleus, unclear	82.09	80.88
TraesCS7A01G491000.1	Wheat	nucleus	82.84	80.43
TraesCS7B01G394700.1	Wheat	nucleus	82.84	80.43
GSMUA_Achr2P19080_001	Banana	nucleus	85.82	80.42
OQU92807	Sorghum	nucleus	88.81	80.41
TraesCS1A01G190400.1	Wheat	nucleus	83.58	80.0
TraesCS7B01G405800.1	Wheat	nucleus	82.84	79.86
HORVU0Hr1G006420.1	Barley	nucleus	82.09	79.71
HORVU3Hr1G034060.1	Barley	nucleus	82.09	79.71
TraesCS3D01G342400.1	Wheat	nucleus	82.09	79.71
TraesCS7B01G394600.1	Wheat	nucleus	82.09	79.71
TraesCS2D01G310800.1	Wheat	nucleus	90.3	79.61
TraesCS4D01G205300.1	Wheat	nucleus	84.33	79.58
EES00304	Sorghum	nucleus	88.06	79.19
Zm00001d044247_P001	Maize	plastid	87.31	79.05
TraesCS7A01G490900.1	Wheat	nucleus	81.34	78.99
TraesCS7B01G394100.1	Wheat	nucleus	81.34	78.99
TraesCS7B01G394400.1	Wheat	nucleus	81.34	78.99
TraesCS7A01G491100.1	Wheat	extracellular, nucleus, unclear	83.58	78.87
TraesCS7B01G394900.1	Wheat	nucleus	83.58	78.87
TraesCS7D01G477300.1	Wheat	nucleus	83.58	78.87
TraesCS4A01G030500.1	Wheat	nucleus	82.84	78.72
EES00399	Sorghum	nucleus	88.06	78.67
Zm00001d011236_P001	Maize	plastid	88.06	78.67
TraesCS6D01G046400.1	Wheat	nucleus	82.09	78.57
EES00305	Sorghum	nucleus	87.31	78.52
Zm00001d039821_P001	Maize	plastid	87.31	78.52
HORVU7Hr1G110290.1	Barley	nucleus	59.7	78.43
TraesCS6A01G040400.1	Wheat	nucleus	81.34	78.42
TraesCSU01G169300.1	Wheat	nucleus	86.57	78.38
TraesCSU01G169400.1	Wheat	nucleus	86.57	78.38
TraesCSU01G169500.1	Wheat	nucleus	86.57	78.38
TraesCSU01G169700.1	Wheat	nucleus	86.57	78.38
TraesCSU01G169800.1	Wheat	nucleus	86.57	78.38
TraesCSU01G169900.1	Wheat	nucleus	86.57	78.38
TraesCSU01G170400.1	Wheat	nucleus	86.57	78.38
TraesCSU01G170500.1	Wheat	nucleus	86.57	78.38
TraesCSU01G170600.1	Wheat	nucleus	86.57	78.38
TraesCSU01G170700.1	Wheat	nucleus	86.57	78.38
TraesCSU01G170900.1	Wheat	nucleus	86.57	78.38
TraesCSU01G171000.1	Wheat	nucleus	86.57	78.38
TraesCSU01G171100.1	Wheat	nucleus	86.57	78.38
EES15460	Sorghum	nucleus	88.81	78.29
TraesCS6A01G040200.1	Wheat	nucleus	80.6	78.26
TraesCS7D01G477400.1	Wheat	nucleus	82.84	78.17
TraesCS4A01G099900.1	Wheat	nucleus	86.57	77.85
TraesCS1A01G228700.1	Wheat	nucleus	88.06	77.63
TraesCS1B01G244900.1	Wheat	nucleus	88.06	77.63
TraesCS1B01G245300.1	Wheat	nucleus	88.06	77.63
TraesCS1D01G233300.1	Wheat	nucleus	88.06	77.63
TraesCS5A01G384300.1	Wheat	nucleus	88.06	77.63
Zm00001d025913_P001	Maize	plastid	86.57	77.33
Zm00001d050100_P001	Maize	plastid	86.57	77.33
TraesCS3D01G351500.1	Wheat	nucleus	70.9	77.24
TraesCS4B01G204400.1	Wheat	nucleus	85.82	77.18
HORVU1Hr1G049920.1	Barley	nucleus	88.06	77.12
TraesCS1B01G192500.1	Wheat	nucleus	88.06	77.12
TraesCS7D01G485700.1	Wheat	nucleus	79.85	76.98
Os03t0279000-00	Rice	nucleus	87.31	76.97
TraesCS3D01G088900.1	Wheat	nucleus	87.31	76.97
TraesCS4A01G260400.1	Wheat	nucleus	87.31	76.97
TraesCS4D01G054200.1	Wheat	nucleus	87.31	76.97
TraesCS5B01G389100.1	Wheat	nucleus	87.31	76.97
Zm00001d032070_P001	Maize	plastid	85.82	76.67
TraesCS4B01G275400.1	Wheat	nucleus	88.06	76.62
Os01t0153100-00	Rice	nucleus	87.31	76.47
TraesCS1B01G357600.1	Wheat	nucleus	82.09	76.39
Zm00001d007084_P001	Maize	plastid	86.57	76.32
EER97675	Sorghum	nucleus	85.82	76.16
TraesCS3A01G088800.1	Wheat	nucleus	85.82	76.16
Zm00001d020580_P001	Maize	plastid	85.82	76.16
HORVU6Hr1G087190.1	Barley	nucleus	85.07	76.0
TraesCS4A01G030400.1	Wheat	nucleus	87.31	75.97
TraesCS6B01G048500.1	Wheat	unclear	82.09	75.86
EER96770	Sorghum	nucleus	86.57	75.82
TraesCS3A01G102500.1	Wheat	nucleus	81.34	75.69
TraesCS6A01G034500.1	Wheat	nucleus	81.34	75.69
TraesCS6A01G035000.1	Wheat	nucleus	81.34	75.69
TraesCS6B01G048800.1	Wheat	nucleus	81.34	75.69
TraesCS6B01G049100.1	Wheat	nucleus	81.34	75.69
TraesCS6B01G049300.1	Wheat	nucleus	81.34	75.69
Os05t0574300-00	Rice	nucleus	85.82	75.66
TraesCS4B01G054200.1	Wheat	nucleus	85.82	75.66
Zm00001d005789_P001	Maize	plastid	85.82	75.66
EES15092	Sorghum	nucleus	85.07	75.5
TraesCS6D01G040600.1	Wheat	nucleus	81.34	75.17
OQU87075	Sorghum	nucleus	85.82	75.16
TraesCS5D01G020000.1	Wheat	nucleus	88.06	75.16
TraesCS6B01G082600.1	Wheat	nucleus	80.6	75.0
TraesCS5B01G058200.1	Wheat	nucleus	88.81	74.84
TraesCS5B01G064900.1	Wheat	nucleus, unclear	88.81	74.84
EES07386	Sorghum	nucleus	86.57	74.84
Zm00001d051591_P001	Maize	plastid	85.82	74.68
TraesCS1D01G396600.1	Wheat	golgi, nucleus, unclear	83.58	74.67
Os01t0149600-01	Rice	nucleus	85.07	74.51
Os01t0152300-00	Rice	nucleus	85.07	74.51
Os01t0152900-00	Rice	nucleus	85.07	74.51
TraesCS1D01G194600.1	Wheat	nucleus	85.07	74.51
TraesCS5A01G051900.1	Wheat	nucleus	86.57	74.36
GSMUA_Achr7P15260_001	Banana	nucleus	84.33	74.34
Os01t0153300-00	Rice	nucleus	85.82	74.19
TraesCS1B01G416600.1	Wheat	nucleus	83.58	74.17
TraesCS3B01G390300.1	Wheat	nucleus	73.88	73.88
TraesCS6D01G040200.1	Wheat	nucleus	79.85	73.79
HORVU6Hr1G005950.2	Barley	nucleus	85.07	73.55
TraesCS1A01G388600.1	Wheat	nucleus	83.58	73.2
TraesCS6B01G376900.1	Wheat	nucleus	82.84	73.03
HORVU7Hr1G110130.1	Barley	nucleus	64.18	72.88
TraesCS1A01G361600.1	Wheat	nucleus	82.84	72.55
TraesCS1A01G367900.1	Wheat	nucleus	82.84	72.55
TraesCS1A01G368000.1	Wheat	nucleus	82.84	72.55
TraesCS1B01G386200.1	Wheat	nucleus	82.84	72.55
TraesCS1B01G386400.1	Wheat	nucleus	82.84	72.55
TraesCS1B01G386700.1	Wheat	nucleus	82.84	72.55
TraesCS1D01G366300.1	Wheat	nucleus	82.84	72.55
TraesCS1D01G373800.1	Wheat	nucleus	82.84	72.55
TraesCS1D01G373900.1	Wheat	nucleus	82.84	72.55
TraesCS6B01G084900.1	Wheat	nucleus	82.84	72.08
TraesCS1D01G232900.1	Wheat	nucleus	84.33	71.97
TraesCS1B01G378300.1	Wheat	nucleus	82.09	71.9
TraesCS1B01G386500.1	Wheat	nucleus	82.09	71.9
TraesCS1B01G386600.1	Wheat	nucleus	82.09	71.9
HORVU1Hr1G091370.1	Barley	nucleus	85.07	71.7
TraesCS6D01G326800.1	Wheat	nucleus, unclear	82.09	71.43
HORVU7Hr1G110330.2	Barley	nucleus	62.69	70.59
TraesCSU01G081100.1	Wheat	nucleus	80.6	70.13
HORVU6Hr1G008320.1	Barley	nucleus	82.09	70.06
HORVU7Hr1G110190.1	Barley	nucleus	68.66	69.7
HORVU6Hr1G015760.1	Barley	nucleus, plastid	84.33	69.33
HORVU1Hr1G072190.4	Barley	nucleus	90.3	68.75
HORVU4Hr1G070240.1	Barley	nucleus	84.33	68.07
HORVU3Hr1G013530.1	Barley	nucleus	82.84	67.68
HORVU7Hr1G110170.1	Barley	nucleus	82.09	67.48
TraesCS5D01G393900.1	Wheat	nucleus	81.34	66.46
HORVU4Hr1G009040.2	Barley	nucleus	85.07	66.28
HORVU3Hr1G013680.1	Barley	nucleus	83.58	65.88
HORVU2Hr1G077630.1	Barley	nucleus	88.81	65.75
HORVU1Hr1G058500.1	Barley	nucleus	88.81	65.03
HORVU6Hr1G006110.1	Barley	nucleus, plastid	56.72	64.96
HORVU4Hr1G073130.1	Barley	nucleus, plastid	88.06	64.48
HORVU7Hr1G110090.1	Barley	nucleus, plastid	82.09	63.58
HORVU1Hr1G085540.1	Barley	nucleus	84.33	63.13
HORVU1Hr1G078480.6	Barley	nucleus	83.58	62.22
HORVU1Hr1G078530.3	Barley	nucleus	83.58	62.22
HORVU6Hr1G083110.1	Barley	nucleus	78.36	61.4
HORVU3Hr1G015810.1	Barley	nucleus, plastid	87.31	55.98
HORVU1Hr1G056530.1	Barley	nucleus, plastid	88.06	55.92
HORVU5Hr1G094500.1	Barley	nucleus, plastid	86.57	54.72
Os08t0490900-00	Rice	nucleus	86.57	54.72
HORVU3Hr1G086580.1	Barley	nucleus, plastid	72.39	52.72
HORVU3Hr1G086610.2	Barley	nucleus	79.1	50.48
Zm00001d048491_P001	Maize	plastid	88.06	49.58
HORVU1Hr1G066130.1	Barley	nucleus	88.81	48.97
GSMUA_Achr6P33320_001	Banana	nucleus	75.37	48.79
TraesCS6B01G081700.1	Wheat	nucleus	55.22	45.12
TraesCS6D01G063200.1	Wheat	nucleus	55.97	37.88
TraesCS6A01G061400.1	Wheat	nucleus	55.97	35.89
KRH30545	Soybean	mitochondrion, nucleus	47.76	32.16
KRH25129	Soybean	nucleus	52.99	31.56

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100789702	MapMan:12.1.3	UniProt:A0A0R0H6V3	EMBL:ACUP02007718	EnsemblPlantsGene:GLYMA_12G179100
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	EnsemblPlants:KRH26542	ProteinID:KRH26542
ProteinID:KRH26542.1	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF172
SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0001817FBF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:33895132..33895978

Molecular Weight (calculated)

14741.1 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.647

Length

134 amino acids

Sequence
(BLAST)

001: MAKAAEKKPA AEKAPAEKKP KAEKKVPKEG SGGEKKKKRS KKSVETYKIY IFKVLKQVHP DIGISSKAMG IMNSFINDIF EKLAQEAARL ARYNKKPTIT
101: SREIQTAVRL VLPGELAKHA VSEGTKAVTK FTSS

Best Arabidopsis Sequence Match ( AT2G28720.1 )
(BLAST)

001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S

Arabidopsis Description

Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.