Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G086400.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCSU01G077200.1 | Wheat | nucleus | 99.26 | 99.26 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 98.52 | 98.52 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 69.63 | 97.92 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 81.48 | 93.22 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 93.33 | 92.65 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 92.59 | 90.58 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 92.59 | 90.58 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 91.85 | 89.86 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 93.33 | 88.73 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 91.11 | 88.49 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 88.89 | 88.24 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 93.33 | 87.5 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 88.89 | 86.96 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 92.59 | 86.81 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 74.81 | 86.32 |
| Bra038267.1-P | Field mustard | nucleus | 87.41 | 86.13 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 91.85 | 86.11 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 89.63 | 85.82 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 88.89 | 85.71 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 97.78 | 85.16 |
| Bra007018.1-P | Field mustard | nucleus | 85.93 | 84.06 |
| Bra039810.1-P | Field mustard | nucleus | 85.93 | 84.06 |
| EES00304 | Sorghum | nucleus | 91.85 | 83.22 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 91.85 | 83.22 |
| Zm00001d039821_P001 | Maize | plastid | 91.85 | 83.22 |
| KRH26542 | Soybean | nucleus | 82.22 | 82.84 |
| KRH22818 | Soybean | nucleus | 81.48 | 82.71 |
| KRG95819 | Soybean | nucleus | 84.44 | 82.61 |
| KRH67549 | Soybean | nucleus | 84.44 | 82.61 |
| AT5G02570.1 | Thale cress | nucleus | 80.74 | 82.58 |
| EES00305 | Sorghum | nucleus | 91.11 | 82.55 |
| AT3G09480.1 | Thale cress | nucleus | 77.04 | 82.54 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 92.59 | 82.24 |
| EES00399 | Sorghum | nucleus | 91.11 | 82.0 |
| KRG92106 | Soybean | nucleus | 82.22 | 81.62 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 98.52 | 81.6 |
| KRH19721 | Soybean | nucleus | 83.7 | 81.3 |
| AT2G37470.1 | Thale cress | nucleus | 82.96 | 81.16 |
| Bra003150.1-P | Field mustard | nucleus | 82.96 | 81.16 |
| PGSC0003DMT400043578 | Potato | nucleus | 84.44 | 80.85 |
| Solyc03g071620.1.1 | Tomato | nucleus | 84.44 | 80.85 |
| AT3G46030.1 | Thale cress | nucleus | 86.67 | 80.69 |
| KRH34681 | Soybean | nucleus | 81.48 | 80.29 |
| Bra002436.1-P | Field mustard | nucleus | 83.7 | 80.14 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 89.63 | 80.13 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 98.52 | 80.12 |
| Solyc11g066430.1.1 | Tomato | nucleus | 82.96 | 80.0 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 90.37 | 79.74 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 90.37 | 79.74 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 90.37 | 79.74 |
| KRH29833 | Soybean | nucleus | 84.44 | 79.72 |
| EES15460 | Sorghum | nucleus | 89.63 | 79.61 |
| PGSC0003DMT400070383 | Potato | nucleus | 83.7 | 79.58 |
| Bra006685.1-P | Field mustard | nucleus | 82.96 | 79.43 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 90.37 | 79.22 |
| Solyc02g038690.1.1 | Tomato | nucleus | 78.52 | 79.1 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 89.63 | 79.08 |
| AT3G53650.1 | Thale cress | nucleus | 80.74 | 78.99 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 88.89 | 78.95 |
| Bra020275.1-P | Field mustard | nucleus | 82.96 | 78.87 |
| PGSC0003DMT400001108 | Potato | nucleus | 82.96 | 78.87 |
| Solyc06g074790.1.1 | Tomato | nucleus | 82.96 | 78.87 |
| PGSC0003DMT400077939 | Potato | nucleus | 85.19 | 78.77 |
| Solyc06g075800.1.1 | Tomato | nucleus | 85.19 | 78.77 |
| Bra002520.1-P | Field mustard | nucleus | 87.41 | 78.67 |
| AT5G22880.1 | Thale cress | nucleus | 84.44 | 78.62 |
| PGSC0003DMT400070382 | Potato | nucleus | 83.7 | 78.47 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 85.93 | 78.38 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 82.96 | 78.32 |
| Solyc11g007930.1.1 | Tomato | nucleus | 80.0 | 78.26 |
| PGSC0003DMT400074994 | Potato | nucleus | 85.19 | 78.23 |
| Solyc06g005390.1.1 | Tomato | nucleus | 85.19 | 78.23 |
| PGSC0003DMT400018456 | Potato | nucleus | 82.22 | 78.17 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 84.44 | 78.08 |
| Bra006639.1-P | Field mustard | nucleus | 82.96 | 77.78 |
| KRH29831 | Soybean | nucleus | 85.19 | 77.7 |
| KRH29832 | Soybean | nucleus | 85.19 | 77.7 |
| KRH29836 | Soybean | nucleus | 85.19 | 77.7 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 87.41 | 77.63 |
| PGSC0003DMT400060096 | Potato | nucleus | 84.44 | 77.55 |
| AT3G45980.1 | Thale cress | nucleus | 85.93 | 77.33 |
| AT5G59910.1 | Thale cress | nucleus | 85.93 | 77.33 |
| KRH24830 | Soybean | nucleus | 85.19 | 77.18 |
| KRH24831 | Soybean | nucleus | 85.19 | 77.18 |
| KRH24833 | Soybean | nucleus | 85.19 | 77.18 |
| PGSC0003DMT400022099 | Potato | nucleus | 82.22 | 77.08 |
| Solyc11g007920.1.1 | Tomato | nucleus | 82.22 | 77.08 |
| AT1G07790.1 | Thale cress | nucleus | 84.44 | 77.03 |
| Solyc05g055440.1.1 | Tomato | nucleus | 83.7 | 76.87 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 82.22 | 76.55 |
| PGSC0003DMT400022074 | Potato | nucleus | 81.48 | 76.39 |
| Solyc12g013510.1.1 | Tomato | nucleus | 78.52 | 76.26 |
| Solyc06g074780.1.1 | Tomato | nucleus | 80.74 | 76.22 |
| Bra035677.1-P | Field mustard | nucleus | 83.7 | 75.84 |
| PGSC0003DMT400018455 | Potato | nucleus | 80.0 | 75.52 |
| Bra011930.1-P | Field mustard | nucleus | 82.96 | 75.17 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 86.67 | 75.0 |
| AT2G28720.1 | Thale cress | nucleus | 83.7 | 74.83 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 83.7 | 74.34 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 81.48 | 72.37 |
| Bra000483.1-P | Field mustard | nucleus | 82.96 | 72.26 |
| PGSC0003DMT400074020 | Potato | nucleus | 68.89 | 68.89 |
| CDX71015 | Canola | nucleus | 31.85 | 65.15 |
| Solyc10g044580.1.1 | Tomato | nucleus | 60.0 | 60.0 |
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 37.78 | 57.3 |
| Zm00001d048491_P001 | Maize | plastid | 89.63 | 50.84 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 84.44 | 49.57 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 72.59 | 47.34 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 58.52 | 37.8 |
| PGSC0003DMT400074018 | Potato | nucleus | 60.0 | 21.26 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF62 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6A01G086200 |
| EnsemblPlants:TraesCS6A01G086200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:54778105..54778724
Molecular Weight (calculated)
14757.2 Da
IEP (calculated)
10.856
GRAVY (calculated)
-0.627
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAAEKKP VERTPAGKKP KAEKKVPASK EGGDKKGKKK AKKSVETYKI YIFKVLKQVH PDIGISSKAM SIMNSFINDI FEKLAGESAK LARYNKKPTI
101: TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS
101: TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.