Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G086400.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCSU01G077200.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 98.52 | 98.52 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 94.07 | 92.03 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 94.07 | 92.03 |
| Bra038267.1-P | Field mustard | nucleus | 88.15 | 86.86 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 99.26 | 86.45 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 74.81 | 86.32 |
| KRH26542 | Soybean | nucleus | 83.7 | 84.33 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 63.7 | 84.31 |
| KRH22818 | Soybean | nucleus | 82.96 | 84.21 |
| Bra007018.1-P | Field mustard | nucleus | 85.93 | 84.06 |
| Bra039810.1-P | Field mustard | nucleus | 85.93 | 84.06 |
| KRG95819 | Soybean | nucleus | 85.19 | 83.33 |
| KRH67549 | Soybean | nucleus | 85.19 | 83.33 |
| EES00304 | Sorghum | nucleus | 91.85 | 83.22 |
| Zm00001d039821_P001 | Maize | plastid | 91.85 | 83.22 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 100.0 | 82.82 |
| AT2G37470.1 | Thale cress | nucleus | 84.44 | 82.61 |
| Bra003150.1-P | Field mustard | nucleus | 84.44 | 82.61 |
| AT5G02570.1 | Thale cress | nucleus | 80.74 | 82.58 |
| EES00305 | Sorghum | nucleus | 91.11 | 82.55 |
| AT3G09480.1 | Thale cress | nucleus | 77.04 | 82.54 |
| KRG92106 | Soybean | nucleus | 82.96 | 82.35 |
| KRH19721 | Soybean | nucleus | 84.44 | 82.01 |
| EES00399 | Sorghum | nucleus | 91.11 | 82.0 |
| PGSC0003DMT400043578 | Potato | nucleus | 85.19 | 81.56 |
| Solyc03g071620.1.1 | Tomato | nucleus | 85.19 | 81.56 |
| AT3G46030.1 | Thale cress | nucleus | 87.41 | 81.38 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 90.37 | 81.33 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 100.0 | 81.33 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 98.52 | 81.1 |
| KRH34681 | Soybean | nucleus | 82.22 | 81.02 |
| PGSC0003DMT400070383 | Potato | nucleus | 85.19 | 80.99 |
| Bra006685.1-P | Field mustard | nucleus | 84.44 | 80.85 |
| Solyc11g066430.1.1 | Tomato | nucleus | 83.7 | 80.71 |
| Solyc02g038690.1.1 | Tomato | nucleus | 80.0 | 80.6 |
| AT3G53650.1 | Thale cress | nucleus | 82.22 | 80.43 |
| KRH29833 | Soybean | nucleus | 85.19 | 80.42 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 91.11 | 80.39 |
| Bra002436.1-P | Field mustard | nucleus | 83.7 | 80.14 |
| Solyc11g007930.1.1 | Tomato | nucleus | 81.48 | 79.71 |
| EES15460 | Sorghum | nucleus | 89.63 | 79.61 |
| Bra020275.1-P | Field mustard | nucleus | 83.7 | 79.58 |
| PGSC0003DMT400001108 | Potato | nucleus | 83.7 | 79.58 |
| Solyc06g074790.1.1 | Tomato | nucleus | 83.7 | 79.58 |
| Bra002520.1-P | Field mustard | nucleus | 88.15 | 79.33 |
| AT5G22880.1 | Thale cress | nucleus | 85.19 | 79.31 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 86.67 | 79.05 |
| PGSC0003DMT400074994 | Potato | nucleus | 85.93 | 78.91 |
| Solyc06g005390.1.1 | Tomato | nucleus | 85.93 | 78.91 |
| PGSC0003DMT400018456 | Potato | nucleus | 82.96 | 78.87 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 99.26 | 78.82 |
| PGSC0003DMT400077939 | Potato | nucleus | 85.19 | 78.77 |
| Solyc06g075800.1.1 | Tomato | nucleus | 85.19 | 78.77 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 85.19 | 78.77 |
| Bra006639.1-P | Field mustard | nucleus | 83.7 | 78.47 |
| PGSC0003DMT400022099 | Potato | nucleus | 83.7 | 78.47 |
| PGSC0003DMT400070382 | Potato | nucleus | 83.7 | 78.47 |
| Solyc11g007920.1.1 | Tomato | nucleus | 83.7 | 78.47 |
| AT1G07790.1 | Thale cress | nucleus | 85.93 | 78.38 |
| KRH29831 | Soybean | nucleus | 85.93 | 78.38 |
| KRH29832 | Soybean | nucleus | 85.93 | 78.38 |
| KRH29836 | Soybean | nucleus | 85.93 | 78.38 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 82.96 | 78.32 |
| PGSC0003DMT400060096 | Potato | nucleus | 85.19 | 78.23 |
| Solyc05g055440.1.1 | Tomato | nucleus | 85.19 | 78.23 |
| AT3G45980.1 | Thale cress | nucleus | 86.67 | 78.0 |
| AT5G59910.1 | Thale cress | nucleus | 86.67 | 78.0 |
| KRH24830 | Soybean | nucleus | 85.93 | 77.85 |
| KRH24831 | Soybean | nucleus | 85.93 | 77.85 |
| KRH24833 | Soybean | nucleus | 85.93 | 77.85 |
| PGSC0003DMT400022074 | Potato | nucleus | 82.96 | 77.78 |
| Solyc12g013510.1.1 | Tomato | nucleus | 80.0 | 77.7 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 93.33 | 77.3 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 82.96 | 77.24 |
| Bra035677.1-P | Field mustard | nucleus | 85.19 | 77.18 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 88.89 | 76.43 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 89.63 | 76.1 |
| Bra011930.1-P | Field mustard | nucleus | 83.7 | 75.84 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 85.19 | 75.66 |
| PGSC0003DMT400018455 | Potato | nucleus | 80.0 | 75.52 |
| Solyc06g074780.1.1 | Tomato | nucleus | 80.0 | 75.52 |
| AT2G28720.1 | Thale cress | nucleus | 84.44 | 75.5 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 65.19 | 74.58 |
| Bra000483.1-P | Field mustard | nucleus | 84.44 | 73.55 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 71.85 | 73.48 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 64.44 | 73.11 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 82.22 | 73.03 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 93.33 | 72.83 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 90.37 | 70.93 |
| PGSC0003DMT400074020 | Potato | nucleus | 70.37 | 70.37 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 91.11 | 69.89 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 91.85 | 68.51 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 59.26 | 68.38 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 91.11 | 68.33 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 91.11 | 68.33 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 90.37 | 66.67 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 89.63 | 66.12 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 86.67 | 65.36 |
| CDX71015 | Canola | nucleus | 31.85 | 65.15 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 80.74 | 63.74 |
| Solyc10g044580.1.1 | Tomato | nucleus | 61.48 | 61.48 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 91.85 | 59.33 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 89.63 | 57.08 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 88.89 | 56.87 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 74.07 | 54.35 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 81.48 | 52.38 |
| Zm00001d048491_P001 | Maize | plastid | 89.63 | 50.84 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 90.37 | 50.21 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 85.19 | 50.0 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 73.33 | 47.83 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 43.7 | 33.15 |
| PGSC0003DMT400074018 | Potato | nucleus | 60.74 | 21.52 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | UniProt:A0A287TF25 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:HORVU6Hr1G015790 | EnsemblPlants:HORVU6Hr1G015790.1 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF62 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000B4880B1 | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A287TF25]
Coordinates
chrchr6H:-:35212392..35214227
Molecular Weight (calculated)
14745.1 Da
IEP (calculated)
10.826
GRAVY (calculated)
-0.641
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAAEKKP VEKTPAGKKP KAEKKVPASK EGGDKKGKKK SKKSVETYKI YIFKVLKQVH PDIGISSKAM SIMNSFINDI FEKLAGESAK LARYNKKPTI
101: TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS
101: TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS
001: MAPKAAEKKP AEKKPAGKAP AEKLPKAEKK ISKDAGGSEK KKKKSKKSVE TYKIYIFKVL KQVHPDVGIS GKAMGIMNSF INDIFEKLAQ ESSKLARYNK
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS
Arabidopsis Description
Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.