Factsheet for HORVU3Hr1G086580.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G351500.1	Wheat	nucleus	57.61	86.18
TraesCS3B01G390300.1	Wheat	nucleus	60.87	83.58
GSMUA_Achr9P04060_001	Banana	nucleus	48.37	76.07
HORVU6Hr1G015790.1	Barley	nucleus	54.35	74.07
HORVU0Hr1G006420.1	Barley	nucleus	55.43	73.91
HORVU3Hr1G034060.1	Barley	nucleus	55.43	73.91
AT3G09480.1	Thale cress	nucleus	50.54	73.81
Bra038267.1-P	Field mustard	nucleus	54.89	73.72
AT5G02570.1	Thale cress	nucleus	52.72	73.48
Bra007018.1-P	Field mustard	nucleus	54.89	73.19
Bra039810.1-P	Field mustard	nucleus	54.89	73.19
KRH22818	Soybean	nucleus	52.72	72.93
KRG92106	Soybean	nucleus	53.8	72.79
Bra003150.1-P	Field mustard	nucleus	54.35	72.46
KRG95819	Soybean	nucleus	54.35	72.46
KRH67549	Soybean	nucleus	54.35	72.46
KRH26542	Soybean	nucleus	52.72	72.39
Solyc11g066430.1.1	Tomato	nucleus	54.89	72.14
AT2G37470.1	Thale cress	nucleus	53.8	71.74
AT3G53650.1	Thale cress	nucleus	53.8	71.74
KRH34681	Soybean	nucleus	53.26	71.53
KRH19721	Soybean	nucleus	53.8	71.22
PGSC0003DMT400043578	Potato	nucleus	54.35	70.92
Solyc03g071620.1.1	Tomato	nucleus	54.35	70.92
PGSC0003DMT400001108	Potato	nucleus	54.35	70.42
PGSC0003DMT400070383	Potato	nucleus	54.35	70.42
Solyc06g074790.1.1	Tomato	nucleus	54.35	70.42
AT3G46030.1	Thale cress	nucleus	55.43	70.34
Solyc11g007930.1.1	Tomato	nucleus	52.72	70.29
Solyc02g038690.1.1	Tomato	nucleus	51.09	70.15
PGSC0003DMT400018456	Potato	nucleus	53.8	69.72
PGSC0003DMT400022074	Potato	nucleus	54.35	69.44
PGSC0003DMT400022099	Potato	nucleus	54.35	69.44
GSMUA_Achr2P19080_001	Banana	nucleus	53.8	69.23
KRH29833	Soybean	nucleus	53.8	69.23
PGSC0003DMT400077939	Potato	nucleus	54.89	69.18
Solyc06g075800.1.1	Tomato	nucleus	54.89	69.18
VIT_06s0004g04230.t01	Wine grape	nucleus	54.89	69.18
EES00304	Sorghum	nucleus	55.98	69.13
EES00305	Sorghum	nucleus	55.98	69.13
Solyc12g013510.1.1	Tomato	nucleus	52.17	69.06
VIT_06s0004g04250.t01	Wine grape	nucleus	55.43	68.92
Bra002436.1-P	Field mustard	nucleus	52.72	68.79
Bra006685.1-P	Field mustard	nucleus	52.72	68.79
EES00399	Sorghum	nucleus	55.98	68.67
Solyc06g074780.1.1	Tomato	nucleus	53.26	68.53
Zm00001d039821_P001	Maize	plastid	55.43	68.46
KRH29831	Soybean	nucleus	54.89	68.24
KRH29832	Soybean	nucleus	54.89	68.24
KRH29836	Soybean	nucleus	54.89	68.24
PGSC0003DMT400070382	Potato	nucleus	53.26	68.06
PGSC0003DMT400060096	Potato	nucleus	54.35	68.03
PGSC0003DMT400074994	Potato	nucleus	54.35	68.03
Solyc06g005390.1.1	Tomato	nucleus	54.35	68.03
AT3G45980.1	Thale cress	nucleus	55.43	68.0
Bra002520.1-P	Field mustard	nucleus	55.43	68.0
HORVU6Hr1G087190.1	Barley	nucleus	55.43	68.0
PGSC0003DMT400018455	Potato	nucleus	52.72	67.83
KRH24830	Soybean	nucleus	54.89	67.79
KRH24831	Soybean	nucleus	54.89	67.79
KRH24833	Soybean	nucleus	54.89	67.79
EES15460	Sorghum	nucleus	55.98	67.76
AT5G22880.1	Thale cress	nucleus	53.26	67.59
Bra006639.1-P	Field mustard	nucleus	52.72	67.36
Solyc11g007920.1.1	Tomato	nucleus	52.72	67.36
Solyc05g055440.1.1	Tomato	nucleus	53.8	67.35
AT5G59910.1	Thale cress	nucleus	54.89	67.33
Bra011930.1-P	Field mustard	nucleus	54.35	67.11
Bra035677.1-P	Field mustard	nucleus	54.35	67.11
HORVU6Hr1G005950.2	Barley	nucleus	56.52	67.1
Bra020275.1-P	Field mustard	nucleus	51.63	66.9
VIT_13s0019g05370.t01	Wine grape	nucleus	52.72	66.9
AT1G07790.1	Thale cress	nucleus	53.8	66.89
HORVU7Hr1G110170.1	Barley	nucleus	58.7	66.26
AT2G28720.1	Thale cress	nucleus	54.35	66.23
HORVU1Hr1G049920.1	Barley	nucleus	54.89	66.01
CDX71015	Canola	nucleus	23.37	65.15
VIT_06s0004g04300.t01	Wine grape	nucleus	53.8	65.13
HORVU6Hr1G015760.1	Barley	nucleus, plastid	57.61	65.03
HORVU6Hr1G008320.1	Barley	nucleus	55.43	64.97
HORVU1Hr1G091370.1	Barley	nucleus	55.98	64.78
GSMUA_Achr7P15260_001	Banana	nucleus	53.26	64.47
Bra000483.1-P	Field mustard	nucleus	53.8	63.87
HORVU7Hr1G110290.1	Barley	nucleus	35.33	63.73
HORVU7Hr1G110190.1	Barley	nucleus	45.65	63.64
HORVU7Hr1G110130.1	Barley	nucleus	40.76	63.56
HORVU3Hr1G013530.1	Barley	nucleus	56.52	63.41
HORVU7Hr1G110330.2	Barley	nucleus	40.76	63.03
HORVU4Hr1G070240.1	Barley	nucleus	56.52	62.65
HORVU7Hr1G110090.1	Barley	nucleus, plastid	58.7	62.43
HORVU3Hr1G013680.1	Barley	nucleus	56.52	61.18
HORVU4Hr1G009040.2	Barley	nucleus	57.07	61.05
HORVU1Hr1G072190.4	Barley	nucleus	57.61	60.23
PGSC0003DMT400074020	Potato	nucleus	44.02	60.0
HORVU2Hr1G077630.1	Barley	nucleus	58.15	59.12
HORVU6Hr1G006110.1	Barley	nucleus, plastid	37.5	58.97
HORVU1Hr1G078480.6	Barley	nucleus	57.61	58.89
HORVU4Hr1G073130.1	Barley	nucleus, plastid	57.61	57.92
HORVU1Hr1G078530.3	Barley	nucleus	55.98	57.22
HORVU1Hr1G085540.1	Barley	nucleus	55.43	56.98
HORVU1Hr1G058500.1	Barley	nucleus	55.98	56.28
HORVU6Hr1G083110.1	Barley	nucleus	51.09	54.97
Solyc10g044580.1.1	Tomato	nucleus	39.13	53.33
HORVU3Hr1G015810.1	Barley	nucleus, plastid	60.33	53.11
HORVU1Hr1G056530.1	Barley	nucleus, plastid	57.07	49.76
HORVU5Hr1G094500.1	Barley	nucleus, plastid	57.07	49.53
HORVU3Hr1G086610.2	Barley	nucleus	55.43	48.57
Zm00001d048491_P001	Maize	plastid	60.33	46.64
HORVU1Hr1G066130.1	Barley	nucleus	61.41	46.5
VIT_06s0004g04240.t01	Wine grape	nucleus	55.98	44.78
GSMUA_Achr6P33320_001	Banana	nucleus	48.91	43.48
HORVU4Hr1G000750.1	Barley	nucleus	29.89	30.9
PGSC0003DMT400074018	Potato	nucleus	41.3	19.95

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	UniProt:A0A287M3B4	ncoils:Coil	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:HORVU3Hr1G086580	EnsemblPlants:HORVU3Hr1G086580.1
InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621
ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF62	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000B4816B2
SEG:seg	:	:	:	:	:

Description

Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A287M3B4]

Coordinates

chrchr3H:+:617800675..617801501

Molecular Weight (calculated)

20449.9 Da

IEP (calculated)

10.605

GRAVY (calculated)

-0.571

Length

184 amino acids

Sequence
(BLAST)

001: TLSANHAIRA RLYISSTSSP ETHTSNPNAN LQPSTFAPPF DISPLLLEAS MAPKAEKKQT TKKKLMELEK KAKVEKRMPG KEGDTDKKKP KKSNDTYKIY
101: IFKVLKQVHP NMGISSKSMS IINSIITDIF EKLASESANL ARYNKKPTIT SREIQTAVRL VLPGELAKHA VSEGTKAVTK FTMY

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.