Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G075900.1 | Wheat | nucleus | 79.41 | 99.26 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 78.82 | 99.26 |
| TraesCSU01G077400.1 | Wheat | nucleus | 78.82 | 99.26 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 78.24 | 98.52 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 75.29 | 92.75 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 75.29 | 92.75 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 87.65 | 90.85 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 81.76 | 89.68 |
| Bra038267.1-P | Field mustard | nucleus | 69.41 | 86.13 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 58.82 | 85.47 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 81.18 | 84.66 |
| Bra007018.1-P | Field mustard | nucleus | 68.24 | 84.06 |
| Bra039810.1-P | Field mustard | nucleus | 68.24 | 84.06 |
| KRH26542 | Soybean | nucleus | 65.88 | 83.58 |
| KRH22818 | Soybean | nucleus | 65.29 | 83.46 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 50.0 | 83.33 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 81.18 | 83.13 |
| AT2G37470.1 | Thale cress | nucleus | 67.06 | 82.61 |
| Bra003150.1-P | Field mustard | nucleus | 67.06 | 82.61 |
| KRG95819 | Soybean | nucleus | 67.06 | 82.61 |
| KRH67549 | Soybean | nucleus | 67.06 | 82.61 |
| EES00304 | Sorghum | nucleus | 72.35 | 82.55 |
| Zm00001d039821_P001 | Maize | plastid | 72.35 | 82.55 |
| KRG92106 | Soybean | nucleus | 65.88 | 82.35 |
| EES00305 | Sorghum | nucleus | 71.76 | 81.88 |
| AT5G02570.1 | Thale cress | nucleus | 63.53 | 81.82 |
| AT3G09480.1 | Thale cress | nucleus | 60.59 | 81.75 |
| EES00399 | Sorghum | nucleus | 71.76 | 81.33 |
| KRH19721 | Soybean | nucleus | 66.47 | 81.3 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 77.65 | 80.98 |
| PGSC0003DMT400043578 | Potato | nucleus | 67.06 | 80.85 |
| Solyc03g071620.1.1 | Tomato | nucleus | 67.06 | 80.85 |
| AT3G46030.1 | Thale cress | nucleus | 68.82 | 80.69 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 71.18 | 80.67 |
| KRH34681 | Soybean | nucleus | 64.71 | 80.29 |
| PGSC0003DMT400070383 | Potato | nucleus | 67.06 | 80.28 |
| Bra006685.1-P | Field mustard | nucleus | 66.47 | 80.14 |
| Solyc11g066430.1.1 | Tomato | nucleus | 65.88 | 80.0 |
| Solyc02g038690.1.1 | Tomato | nucleus | 62.94 | 79.85 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 71.76 | 79.74 |
| KRH29833 | Soybean | nucleus | 67.06 | 79.72 |
| AT3G53650.1 | Thale cress | nucleus | 64.71 | 79.71 |
| Solyc06g074790.1.1 | Tomato | nucleus | 66.47 | 79.58 |
| Bra002436.1-P | Field mustard | nucleus | 65.88 | 79.43 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 74.12 | 79.25 |
| Solyc11g007930.1.1 | Tomato | nucleus | 64.12 | 78.99 |
| EES15460 | Sorghum | nucleus | 70.59 | 78.95 |
| Bra020275.1-P | Field mustard | nucleus | 65.88 | 78.87 |
| PGSC0003DMT400001108 | Potato | nucleus | 65.88 | 78.87 |
| PGSC0003DMT400018456 | Potato | nucleus | 65.88 | 78.87 |
| Bra002520.1-P | Field mustard | nucleus | 69.41 | 78.67 |
| AT5G22880.1 | Thale cress | nucleus | 67.06 | 78.62 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 68.24 | 78.38 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 72.35 | 78.34 |
| PGSC0003DMT400074994 | Potato | nucleus | 67.65 | 78.23 |
| Solyc06g005390.1.1 | Tomato | nucleus | 67.65 | 78.23 |
| PGSC0003DMT400077939 | Potato | nucleus | 67.06 | 78.08 |
| Solyc06g075800.1.1 | Tomato | nucleus | 67.06 | 78.08 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 67.06 | 78.08 |
| Bra006639.1-P | Field mustard | nucleus | 65.88 | 77.78 |
| PGSC0003DMT400022099 | Potato | nucleus | 65.88 | 77.78 |
| PGSC0003DMT400070382 | Potato | nucleus | 65.88 | 77.78 |
| Solyc11g007920.1.1 | Tomato | nucleus | 65.88 | 77.78 |
| AT1G07790.1 | Thale cress | nucleus | 67.65 | 77.7 |
| KRH29831 | Soybean | nucleus | 67.65 | 77.7 |
| KRH29832 | Soybean | nucleus | 67.65 | 77.7 |
| KRH29836 | Soybean | nucleus | 67.65 | 77.7 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 65.29 | 77.62 |
| PGSC0003DMT400060096 | Potato | nucleus | 67.06 | 77.55 |
| Solyc05g055440.1.1 | Tomato | nucleus | 67.06 | 77.55 |
| AT3G45980.1 | Thale cress | nucleus | 68.24 | 77.33 |
| AT5G59910.1 | Thale cress | nucleus | 68.24 | 77.33 |
| KRH24830 | Soybean | nucleus | 67.65 | 77.18 |
| KRH24831 | Soybean | nucleus | 67.65 | 77.18 |
| KRH24833 | Soybean | nucleus | 67.65 | 77.18 |
| PGSC0003DMT400022074 | Potato | nucleus | 65.29 | 77.08 |
| Solyc12g013510.1.1 | Tomato | nucleus | 62.94 | 76.98 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 65.29 | 76.55 |
| Bra035677.1-P | Field mustard | nucleus | 67.06 | 76.51 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 77.65 | 76.3 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 52.94 | 76.27 |
| PGSC0003DMT400018455 | Potato | nucleus | 63.53 | 75.52 |
| Solyc06g074780.1.1 | Tomato | nucleus | 63.53 | 75.52 |
| Bra011930.1-P | Field mustard | nucleus | 65.88 | 75.17 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 67.06 | 75.0 |
| AT2G28720.1 | Thale cress | nucleus | 66.47 | 74.83 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 52.35 | 74.79 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 57.65 | 74.24 |
| Bra000483.1-P | Field mustard | nucleus | 66.47 | 72.9 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 64.71 | 72.37 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 72.94 | 72.09 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 74.12 | 70.0 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 72.35 | 69.89 |
| PGSC0003DMT400074020 | Potato | nucleus | 55.29 | 69.63 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 73.53 | 69.06 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 72.94 | 68.89 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 46.47 | 67.52 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 72.35 | 67.21 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 69.41 | 65.92 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 70.59 | 65.57 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 65.29 | 64.91 |
| CDX71015 | Canola | nucleus | 24.71 | 63.64 |
| Solyc10g044580.1.1 | Tomato | nucleus | 48.24 | 60.74 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 74.12 | 60.29 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 71.18 | 57.08 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 70.59 | 56.87 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 61.18 | 56.52 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 64.12 | 51.9 |
| Zm00001d048491_P001 | Maize | plastid | 72.35 | 51.68 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 72.94 | 51.03 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 67.06 | 49.57 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 57.65 | 47.34 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 34.71 | 33.15 |
| PGSC0003DMT400074018 | Potato | nucleus | 50.0 | 22.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | UniProt:A0A287K5L5 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:HORVU3Hr1G013680 | EnsemblPlants:HORVU3Hr1G013680.1 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF62 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000B46663F | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A287K5L5]
Coordinates
chrchr3H:-:30373028..30374063
Molecular Weight (calculated)
18319.3 Da
IEP (calculated)
11.059
GRAVY (calculated)
-0.650
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: RRQSTTNPPT IQRSHTHTRA HLPLAAAAAG ASSSMAPKAA EKKPVEKTPA GKKPKAEKKV PASKEGGGDK KGKKKSKKSV ETYKIYIFKV LKQVHPDIGI
101: SSKAMSIMNS FINDIFEKLA GESAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSA
101: SSKAMSIMNS FINDIFEKLA GESAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSA
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
Arabidopsis Description
Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.