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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
plastid: 20363867
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400070382 Potato nucleus 97.92 97.92
GSMUA_Achr8P20900_001 Banana nucleus 44.44 96.97
Solyc05g055440.1.1 Tomato nucleus 97.22 95.24
Solyc03g071620.1.1 Tomato nucleus 92.36 94.33
GSMUA_Achr10P... Banana nucleus 43.06 93.94
GSMUA_Achr9P04060_001 Banana nucleus 75.0 92.31
VIT_06s0004g04230.t01 Wine grape nucleus 93.06 91.78
Solyc12g013510.1.1 Tomato nucleus 88.19 91.37
VIT_06s0004g04250.t01 Wine grape nucleus 93.06 90.54
Solyc02g038690.1.1 Tomato nucleus 84.03 90.3
VIT_06s0004g04300.t01 Wine grape nucleus 95.14 90.13
Solyc11g007930.1.1 Tomato nucleus 86.11 89.86
Solyc06g075800.1.1 Tomato nucleus 90.97 89.73
TraesCS6B01G055300.1 Wheat nucleus 59.72 89.58
TraesCS6B01G055500.1 Wheat nucleus 59.72 89.58
Solyc06g074790.1.1 Tomato nucleus 88.19 89.44
TraesCS6D01G046500.1 Wheat nucleus 40.97 89.39
KRH29833 Soybean nucleus 88.19 88.81
Solyc06g074780.1.1 Tomato nucleus 88.19 88.81
TraesCS7B01G394800.1 Wheat nucleus 59.72 88.66
TraesCS3A01G075800.1 Wheat nucleus 59.03 88.54
KRH29831 Soybean nucleus 90.97 88.51
KRH29832 Soybean nucleus 90.97 88.51
KRH29836 Soybean nucleus 90.97 88.51
KRH24830 Soybean nucleus 90.97 87.92
KRH24831 Soybean nucleus 90.97 87.92
KRH24833 Soybean nucleus 90.97 87.92
Os05t0460475-00 Rice nucleus 64.58 87.74
Solyc11g066430.1.1 Tomato nucleus 84.72 87.14
TraesCS2A01G312400.1 Wheat nucleus 70.83 86.44
TraesCS3A01G357500.1 Wheat nucleus 81.25 86.03
TraesCS3D01G351300.1 Wheat nucleus 81.25 86.03
TraesCS3D01G351400.1 Wheat nucleus 81.25 86.03
Solyc06g005390.1.1 Tomato nucleus 87.5 85.71
TraesCS3A01G357400.1 Wheat nucleus 81.94 85.51
TraesCS7B01G394500.1 Wheat nucleus 56.94 85.42
GSMUA_Achr2P19080_001 Banana nucleus 84.72 85.31
TraesCS3B01G390000.1 Wheat nucleus 80.56 85.29
TraesCS3B01G390100.1 Wheat nucleus 79.86 85.19
Os01t0839500-00 Rice nucleus 81.94 84.89
HORVU6Hr1G015790.1 Barley nucleus 78.47 83.7
EES03855 Sorghum nucleus 79.17 83.21
Zm00001d012423_P001 Maize plastid 79.17 83.21
Zm00001d042930_P001 Maize plastid 79.17 83.21
TraesCS1B01G294500.1 Wheat nucleus 85.42 83.11
EES18353 Sorghum nucleus 84.72 82.99
TraesCS6A01G086400.1 Wheat nucleus 77.78 82.96
TraesCS6B01G116000.1 Wheat nucleus 77.78 82.96
TraesCSU01G077200.1 Wheat nucleus 77.78 82.96
TraesCS4D01G205300.1 Wheat nucleus 81.25 82.39
TraesCS3D01G099000.1 Wheat nucleus 77.78 82.35
TraesCS3B01G114600.1 Wheat nucleus 77.08 82.22
TraesCS6A01G086200.1 Wheat nucleus 77.08 82.22
TraesCSU01G077400.1 Wheat nucleus 77.08 82.22
OQU92807 Sorghum nucleus 84.03 81.76
TraesCS3D01G075900.1 Wheat nucleus 77.08 81.62
TraesCS6D01G046200.1 Wheat nucleus, unclear 77.08 81.62
TraesCS6D01G046600.1 Wheat nucleus 77.08 81.62
Os03t0279000-00 Rice nucleus 86.11 81.58
TraesCS3B01G114400.1 Wheat nucleus 76.39 81.48
EES00304 Sorghum nucleus 84.03 81.21
TraesCS6A01G040500.1 Wheat nucleus 76.39 80.88
EES00399 Sorghum nucleus 84.03 80.67
TraesCS7B01G405800.1 Wheat nucleus 77.78 80.58
EES00305 Sorghum nucleus 83.33 80.54
TraesCS4A01G099900.1 Wheat nucleus 83.33 80.54
Zm00001d039821_P001 Maize plastid 83.33 80.54
TraesCSU01G169300.1 Wheat nucleus 82.64 80.41
TraesCSU01G169400.1 Wheat nucleus 82.64 80.41
TraesCSU01G169500.1 Wheat nucleus 82.64 80.41
TraesCSU01G169700.1 Wheat nucleus 82.64 80.41
TraesCSU01G169800.1 Wheat nucleus 82.64 80.41
TraesCSU01G169900.1 Wheat nucleus 82.64 80.41
TraesCSU01G170400.1 Wheat nucleus 82.64 80.41
TraesCSU01G170500.1 Wheat nucleus 82.64 80.41
TraesCSU01G170600.1 Wheat nucleus 82.64 80.41
TraesCSU01G170700.1 Wheat nucleus 82.64 80.41
TraesCSU01G170900.1 Wheat nucleus 82.64 80.41
TraesCSU01G171000.1 Wheat nucleus 82.64 80.41
TraesCSU01G171100.1 Wheat nucleus 82.64 80.41
Zm00001d044247_P001 Maize plastid 82.64 80.41
TraesCS5A01G384300.1 Wheat nucleus 84.72 80.26
TraesCS5B01G389100.1 Wheat nucleus 84.72 80.26
TraesCS1A01G190400.1 Wheat nucleus 77.78 80.0
TraesCS4B01G204400.1 Wheat nucleus 82.64 79.87
TraesCS7A01G491000.1 Wheat nucleus 76.39 79.71
TraesCS7B01G394700.1 Wheat nucleus 76.39 79.71
TraesCS2D01G310800.1 Wheat nucleus 84.03 79.61
Zm00001d011236_P001 Maize plastid 82.64 79.33
HORVU0Hr1G006420.1 Barley nucleus 75.69 78.99
HORVU3Hr1G034060.1 Barley nucleus 75.69 78.99
TraesCS3D01G342400.1 Wheat nucleus 75.69 78.99
TraesCS7B01G394600.1 Wheat nucleus 75.69 78.99
EES15460 Sorghum nucleus 83.33 78.95
TraesCS3D01G088900.1 Wheat nucleus 83.33 78.95
TraesCS4A01G260400.1 Wheat nucleus 83.33 78.95
TraesCS4D01G054200.1 Wheat nucleus 83.33 78.95
TraesCS7A01G491100.1 Wheat extracellular, nucleus, unclear 77.78 78.87
TraesCS7B01G394900.1 Wheat nucleus 77.78 78.87
TraesCS7D01G477300.1 Wheat nucleus 77.78 78.87
TraesCS4A01G030500.1 Wheat nucleus 77.08 78.72
GSMUA_Achr7P15260_001 Banana nucleus 82.64 78.29
Zm00001d007084_P001 Maize plastid 82.64 78.29
TraesCS7A01G490900.1 Wheat nucleus 75.0 78.26
TraesCS7B01G394100.1 Wheat nucleus 75.0 78.26
TraesCS7B01G394400.1 Wheat nucleus 75.0 78.26
TraesCS7D01G477400.1 Wheat nucleus 77.08 78.17
HORVU6Hr1G087190.1 Barley nucleus 81.25 78.0
TraesCS6D01G046400.1 Wheat nucleus 75.69 77.86
Os01t0153100-00 Rice nucleus 82.64 77.78
TraesCS6A01G040400.1 Wheat nucleus 75.0 77.7
TraesCS7D01G485700.1 Wheat nucleus 75.0 77.7
Os05t0574300-00 Rice nucleus 81.94 77.63
TraesCS1B01G244900.1 Wheat nucleus 81.94 77.63
TraesCS1B01G245300.1 Wheat nucleus 81.94 77.63
TraesCS4B01G054200.1 Wheat nucleus 81.94 77.63
TraesCS6A01G040200.1 Wheat nucleus 74.31 77.54
TraesCS3A01G088800.1 Wheat nucleus 81.25 77.48
Zm00001d025913_P001 Maize plastid 80.56 77.33
Zm00001d050100_P001 Maize plastid 80.56 77.33
TraesCS3D01G351500.1 Wheat nucleus 65.97 77.24
EER96770 Sorghum nucleus 81.94 77.12
HORVU1Hr1G049920.1 Barley nucleus 81.94 77.12
TraesCS1B01G192500.1 Wheat nucleus 81.94 77.12
TraesCS5D01G020000.1 Wheat nucleus 84.03 77.07
TraesCS1A01G228700.1 Wheat nucleus 81.25 76.97
TraesCS1D01G233300.1 Wheat nucleus 81.25 76.97
EER97675 Sorghum nucleus 80.56 76.82
EES15092 Sorghum nucleus 80.56 76.82
Zm00001d020580_P001 Maize plastid 80.56 76.82
Zm00001d032070_P001 Maize plastid 79.86 76.67
TraesCS4B01G275400.1 Wheat nucleus 81.94 76.62
Zm00001d051591_P001 Maize plastid 81.94 76.62
HORVU7Hr1G110290.1 Barley nucleus 54.17 76.47
OQU87075 Sorghum nucleus 81.25 76.47
TraesCS1B01G357600.1 Wheat nucleus 76.39 76.39
Zm00001d005789_P001 Maize plastid 80.56 76.32
TraesCS4A01G030400.1 Wheat nucleus 81.25 75.97
Os01t0149600-01 Rice nucleus 80.56 75.82
Os01t0152900-00 Rice nucleus 80.56 75.82
TraesCS3A01G102500.1 Wheat nucleus 75.69 75.69
TraesCS6A01G034500.1 Wheat nucleus 75.69 75.69
TraesCS6A01G035000.1 Wheat nucleus 75.69 75.69
TraesCS6B01G049300.1 Wheat nucleus 75.69 75.69
TraesCS5A01G051900.1 Wheat nucleus 81.94 75.64
EES07386 Sorghum nucleus 81.25 75.48
Os01t0153300-00 Rice nucleus 81.25 75.48
TraesCS5B01G058200.1 Wheat nucleus 83.33 75.47
TraesCS5B01G064900.1 Wheat nucleus, unclear 83.33 75.47
TraesCS1D01G396600.1 Wheat golgi, nucleus, unclear 78.47 75.33
TraesCS6B01G048500.1 Wheat unclear 75.69 75.17
Os01t0152300-00 Rice nucleus 79.86 75.16
TraesCS6B01G048800.1 Wheat nucleus 75.0 75.0
TraesCS6B01G049100.1 Wheat nucleus 75.0 75.0
TraesCS6B01G082600.1 Wheat nucleus 75.0 75.0
TraesCS1B01G416600.1 Wheat nucleus 78.47 74.83
TraesCS1D01G194600.1 Wheat nucleus 79.17 74.51
TraesCS6D01G040600.1 Wheat nucleus 75.0 74.48
TraesCS6B01G084900.1 Wheat nucleus 79.17 74.03
TraesCS3B01G390300.1 Wheat nucleus 68.75 73.88
TraesCS1A01G388600.1 Wheat nucleus 78.47 73.86
TraesCS6D01G040200.1 Wheat nucleus 74.31 73.79
TraesCS1A01G361600.1 Wheat nucleus 77.78 73.2
TraesCS1A01G367900.1 Wheat nucleus 77.78 73.2
TraesCS1A01G368000.1 Wheat nucleus 77.78 73.2
TraesCS1B01G386200.1 Wheat nucleus 77.78 73.2
TraesCS1B01G386400.1 Wheat nucleus 77.78 73.2
TraesCS1B01G386700.1 Wheat nucleus 77.78 73.2
TraesCS1D01G366300.1 Wheat nucleus 77.78 73.2
TraesCS1D01G373800.1 Wheat nucleus 77.78 73.2
TraesCS1D01G373900.1 Wheat nucleus 77.78 73.2
HORVU7Hr1G110130.1 Barley nucleus 59.72 72.88
TraesCS1D01G232900.1 Wheat nucleus 79.17 72.61
TraesCS1B01G378300.1 Wheat nucleus 77.08 72.55
TraesCS1B01G386500.1 Wheat nucleus 77.08 72.55
TraesCS1B01G386600.1 Wheat nucleus 77.08 72.55
TraesCS6B01G376900.1 Wheat nucleus 76.39 72.37
HORVU6Hr1G005950.2 Barley nucleus 77.78 72.26
HORVU7Hr1G110330.2 Barley nucleus 59.03 71.43
TraesCS6D01G326800.1 Wheat nucleus, unclear 76.39 71.43
HORVU6Hr1G008320.1 Barley nucleus 77.78 71.34
TraesCSU01G081100.1 Wheat nucleus 75.69 70.78
TraesCS5D01G393900.1 Wheat nucleus 79.86 70.12
HORVU1Hr1G072190.4 Barley nucleus 85.42 69.89
HORVU6Hr1G015760.1 Barley nucleus, plastid 78.47 69.33
HORVU3Hr1G013530.1 Barley nucleus 78.47 68.9
Solyc10g044580.1.1 Tomato nucleus 64.58 68.89
HORVU1Hr1G091370.1 Barley nucleus 75.69 68.55
HORVU7Hr1G110190.1 Barley nucleus 62.5 68.18
HORVU4Hr1G070240.1 Barley nucleus 78.47 68.07
HORVU4Hr1G009040.2 Barley nucleus 81.25 68.02
HORVU7Hr1G110170.1 Barley nucleus 75.69 66.87
HORVU2Hr1G077630.1 Barley nucleus 83.33 66.3
HORVU3Hr1G013680.1 Barley nucleus 77.78 65.88
HORVU1Hr1G058500.1 Barley nucleus 82.64 65.03
HORVU6Hr1G006110.1 Barley nucleus, plastid 52.78 64.96
HORVU4Hr1G073130.1 Barley nucleus, plastid 81.94 64.48
HORVU1Hr1G085540.1 Barley nucleus 79.86 64.25
HORVU7Hr1G110090.1 Barley nucleus, plastid 75.69 63.01
HORVU1Hr1G078480.6 Barley nucleus 77.78 62.22
HORVU1Hr1G078530.3 Barley nucleus 77.78 62.22
HORVU6Hr1G083110.1 Barley nucleus 72.22 60.82
VIT_06s0004g04240.t01 Wine grape nucleus 95.14 59.57
HORVU5Hr1G094500.1 Barley nucleus, plastid 84.03 57.08
HORVU3Hr1G015810.1 Barley nucleus, plastid 81.94 56.46
Os08t0490900-00 Rice nucleus 82.64 56.13
HORVU1Hr1G056530.1 Barley nucleus, plastid 81.94 55.92
HORVU3Hr1G086580.1 Barley nucleus, plastid 67.36 52.72
GSMUA_Achr6P33320_001 Banana nucleus 74.31 51.69
HORVU3Hr1G086610.2 Barley nucleus 75.0 51.43
Zm00001d048491_P001 Maize plastid 82.64 50.0
HORVU1Hr1G066130.1 Barley nucleus 83.33 49.38
TraesCS6B01G081700.1 Wheat nucleus 54.17 47.56
TraesCS6D01G063200.1 Wheat nucleus 54.86 39.9
TraesCS6A01G061400.1 Wheat nucleus 54.17 37.32
Solyc06g074750.1.1 Tomato mitochondrion, nucleus 52.78 26.86
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.3GO:GO:0000786GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005694GO:GO:0046982InterPro:Histone-foldInterPro:Histone_H2A/H2B/H3InterPro:Histone_H2BInterPro:IPR009072
UniProt:K4D553PFAM:PF00125PRINTS:PR00621ScanProsite:PS00357PANTHER:PTHR23428PANTHER:PTHR23428:SF172
SMART:SM00427SUPFAM:SSF47113EnsemblPlantsGene:Solyc11g007920.1EnsemblPlants:Solyc11g007920.1.1UniParc:UPI000276A5B7SEG:seg
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4D553]
Coordinates
chr11:-:2160950..2161384
Molecular Weight (calculated)
15817.5 Da
IEP (calculated)
10.851
GRAVY (calculated)
-0.692
Length
144 amino acids
Sequence
(BLAST)
001: MAPKSEKKPA EKKPAEKTPV AEKAPAEKKP KAGKKLPKDA AAGDKKKKRS KKAVETYKIY IFKVLKQVHP DIGISSKAMG IMNSFINDIF EKLAQEASRL
101: ARYNKKPTIT SREIQTAVRL VLPGELAKHA VSEGTKAVTK FTSS
Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.