Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20363867
nucleus: 25464976 plastid: 26371478 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400070382 | Potato | nucleus | 97.92 | 97.92 |
GSMUA_Achr8P20900_001 | Banana | nucleus | 44.44 | 96.97 |
Solyc05g055440.1.1 | Tomato | nucleus | 97.22 | 95.24 |
Solyc03g071620.1.1 | Tomato | nucleus | 92.36 | 94.33 |
GSMUA_Achr10P... | Banana | nucleus | 43.06 | 93.94 |
GSMUA_Achr9P04060_001 | Banana | nucleus | 75.0 | 92.31 |
VIT_06s0004g04230.t01 | Wine grape | nucleus | 93.06 | 91.78 |
Solyc12g013510.1.1 | Tomato | nucleus | 88.19 | 91.37 |
VIT_06s0004g04250.t01 | Wine grape | nucleus | 93.06 | 90.54 |
Solyc02g038690.1.1 | Tomato | nucleus | 84.03 | 90.3 |
VIT_06s0004g04300.t01 | Wine grape | nucleus | 95.14 | 90.13 |
Solyc11g007930.1.1 | Tomato | nucleus | 86.11 | 89.86 |
Solyc06g075800.1.1 | Tomato | nucleus | 90.97 | 89.73 |
TraesCS6B01G055300.1 | Wheat | nucleus | 59.72 | 89.58 |
TraesCS6B01G055500.1 | Wheat | nucleus | 59.72 | 89.58 |
Solyc06g074790.1.1 | Tomato | nucleus | 88.19 | 89.44 |
TraesCS6D01G046500.1 | Wheat | nucleus | 40.97 | 89.39 |
KRH29833 | Soybean | nucleus | 88.19 | 88.81 |
Solyc06g074780.1.1 | Tomato | nucleus | 88.19 | 88.81 |
TraesCS7B01G394800.1 | Wheat | nucleus | 59.72 | 88.66 |
TraesCS3A01G075800.1 | Wheat | nucleus | 59.03 | 88.54 |
KRH29831 | Soybean | nucleus | 90.97 | 88.51 |
KRH29832 | Soybean | nucleus | 90.97 | 88.51 |
KRH29836 | Soybean | nucleus | 90.97 | 88.51 |
KRH24830 | Soybean | nucleus | 90.97 | 87.92 |
KRH24831 | Soybean | nucleus | 90.97 | 87.92 |
KRH24833 | Soybean | nucleus | 90.97 | 87.92 |
Os05t0460475-00 | Rice | nucleus | 64.58 | 87.74 |
Solyc11g066430.1.1 | Tomato | nucleus | 84.72 | 87.14 |
TraesCS2A01G312400.1 | Wheat | nucleus | 70.83 | 86.44 |
TraesCS3A01G357500.1 | Wheat | nucleus | 81.25 | 86.03 |
TraesCS3D01G351300.1 | Wheat | nucleus | 81.25 | 86.03 |
TraesCS3D01G351400.1 | Wheat | nucleus | 81.25 | 86.03 |
Solyc06g005390.1.1 | Tomato | nucleus | 87.5 | 85.71 |
TraesCS3A01G357400.1 | Wheat | nucleus | 81.94 | 85.51 |
TraesCS7B01G394500.1 | Wheat | nucleus | 56.94 | 85.42 |
GSMUA_Achr2P19080_001 | Banana | nucleus | 84.72 | 85.31 |
TraesCS3B01G390000.1 | Wheat | nucleus | 80.56 | 85.29 |
TraesCS3B01G390100.1 | Wheat | nucleus | 79.86 | 85.19 |
Os01t0839500-00 | Rice | nucleus | 81.94 | 84.89 |
HORVU6Hr1G015790.1 | Barley | nucleus | 78.47 | 83.7 |
EES03855 | Sorghum | nucleus | 79.17 | 83.21 |
Zm00001d012423_P001 | Maize | plastid | 79.17 | 83.21 |
Zm00001d042930_P001 | Maize | plastid | 79.17 | 83.21 |
TraesCS1B01G294500.1 | Wheat | nucleus | 85.42 | 83.11 |
EES18353 | Sorghum | nucleus | 84.72 | 82.99 |
TraesCS6A01G086400.1 | Wheat | nucleus | 77.78 | 82.96 |
TraesCS6B01G116000.1 | Wheat | nucleus | 77.78 | 82.96 |
TraesCSU01G077200.1 | Wheat | nucleus | 77.78 | 82.96 |
TraesCS4D01G205300.1 | Wheat | nucleus | 81.25 | 82.39 |
TraesCS3D01G099000.1 | Wheat | nucleus | 77.78 | 82.35 |
TraesCS3B01G114600.1 | Wheat | nucleus | 77.08 | 82.22 |
TraesCS6A01G086200.1 | Wheat | nucleus | 77.08 | 82.22 |
TraesCSU01G077400.1 | Wheat | nucleus | 77.08 | 82.22 |
OQU92807 | Sorghum | nucleus | 84.03 | 81.76 |
TraesCS3D01G075900.1 | Wheat | nucleus | 77.08 | 81.62 |
TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 77.08 | 81.62 |
TraesCS6D01G046600.1 | Wheat | nucleus | 77.08 | 81.62 |
Os03t0279000-00 | Rice | nucleus | 86.11 | 81.58 |
TraesCS3B01G114400.1 | Wheat | nucleus | 76.39 | 81.48 |
EES00304 | Sorghum | nucleus | 84.03 | 81.21 |
TraesCS6A01G040500.1 | Wheat | nucleus | 76.39 | 80.88 |
EES00399 | Sorghum | nucleus | 84.03 | 80.67 |
TraesCS7B01G405800.1 | Wheat | nucleus | 77.78 | 80.58 |
EES00305 | Sorghum | nucleus | 83.33 | 80.54 |
TraesCS4A01G099900.1 | Wheat | nucleus | 83.33 | 80.54 |
Zm00001d039821_P001 | Maize | plastid | 83.33 | 80.54 |
TraesCSU01G169300.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G169400.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G169500.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G169700.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G169800.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G169900.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G170400.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G170500.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G170600.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G170700.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G170900.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G171000.1 | Wheat | nucleus | 82.64 | 80.41 |
TraesCSU01G171100.1 | Wheat | nucleus | 82.64 | 80.41 |
Zm00001d044247_P001 | Maize | plastid | 82.64 | 80.41 |
TraesCS5A01G384300.1 | Wheat | nucleus | 84.72 | 80.26 |
TraesCS5B01G389100.1 | Wheat | nucleus | 84.72 | 80.26 |
TraesCS1A01G190400.1 | Wheat | nucleus | 77.78 | 80.0 |
TraesCS4B01G204400.1 | Wheat | nucleus | 82.64 | 79.87 |
TraesCS7A01G491000.1 | Wheat | nucleus | 76.39 | 79.71 |
TraesCS7B01G394700.1 | Wheat | nucleus | 76.39 | 79.71 |
TraesCS2D01G310800.1 | Wheat | nucleus | 84.03 | 79.61 |
Zm00001d011236_P001 | Maize | plastid | 82.64 | 79.33 |
HORVU0Hr1G006420.1 | Barley | nucleus | 75.69 | 78.99 |
HORVU3Hr1G034060.1 | Barley | nucleus | 75.69 | 78.99 |
TraesCS3D01G342400.1 | Wheat | nucleus | 75.69 | 78.99 |
TraesCS7B01G394600.1 | Wheat | nucleus | 75.69 | 78.99 |
EES15460 | Sorghum | nucleus | 83.33 | 78.95 |
TraesCS3D01G088900.1 | Wheat | nucleus | 83.33 | 78.95 |
TraesCS4A01G260400.1 | Wheat | nucleus | 83.33 | 78.95 |
TraesCS4D01G054200.1 | Wheat | nucleus | 83.33 | 78.95 |
TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 77.78 | 78.87 |
TraesCS7B01G394900.1 | Wheat | nucleus | 77.78 | 78.87 |
TraesCS7D01G477300.1 | Wheat | nucleus | 77.78 | 78.87 |
TraesCS4A01G030500.1 | Wheat | nucleus | 77.08 | 78.72 |
GSMUA_Achr7P15260_001 | Banana | nucleus | 82.64 | 78.29 |
Zm00001d007084_P001 | Maize | plastid | 82.64 | 78.29 |
TraesCS7A01G490900.1 | Wheat | nucleus | 75.0 | 78.26 |
TraesCS7B01G394100.1 | Wheat | nucleus | 75.0 | 78.26 |
TraesCS7B01G394400.1 | Wheat | nucleus | 75.0 | 78.26 |
TraesCS7D01G477400.1 | Wheat | nucleus | 77.08 | 78.17 |
HORVU6Hr1G087190.1 | Barley | nucleus | 81.25 | 78.0 |
TraesCS6D01G046400.1 | Wheat | nucleus | 75.69 | 77.86 |
Os01t0153100-00 | Rice | nucleus | 82.64 | 77.78 |
TraesCS6A01G040400.1 | Wheat | nucleus | 75.0 | 77.7 |
TraesCS7D01G485700.1 | Wheat | nucleus | 75.0 | 77.7 |
Os05t0574300-00 | Rice | nucleus | 81.94 | 77.63 |
TraesCS1B01G244900.1 | Wheat | nucleus | 81.94 | 77.63 |
TraesCS1B01G245300.1 | Wheat | nucleus | 81.94 | 77.63 |
TraesCS4B01G054200.1 | Wheat | nucleus | 81.94 | 77.63 |
TraesCS6A01G040200.1 | Wheat | nucleus | 74.31 | 77.54 |
TraesCS3A01G088800.1 | Wheat | nucleus | 81.25 | 77.48 |
Zm00001d025913_P001 | Maize | plastid | 80.56 | 77.33 |
Zm00001d050100_P001 | Maize | plastid | 80.56 | 77.33 |
TraesCS3D01G351500.1 | Wheat | nucleus | 65.97 | 77.24 |
EER96770 | Sorghum | nucleus | 81.94 | 77.12 |
HORVU1Hr1G049920.1 | Barley | nucleus | 81.94 | 77.12 |
TraesCS1B01G192500.1 | Wheat | nucleus | 81.94 | 77.12 |
TraesCS5D01G020000.1 | Wheat | nucleus | 84.03 | 77.07 |
TraesCS1A01G228700.1 | Wheat | nucleus | 81.25 | 76.97 |
TraesCS1D01G233300.1 | Wheat | nucleus | 81.25 | 76.97 |
EER97675 | Sorghum | nucleus | 80.56 | 76.82 |
EES15092 | Sorghum | nucleus | 80.56 | 76.82 |
Zm00001d020580_P001 | Maize | plastid | 80.56 | 76.82 |
Zm00001d032070_P001 | Maize | plastid | 79.86 | 76.67 |
TraesCS4B01G275400.1 | Wheat | nucleus | 81.94 | 76.62 |
Zm00001d051591_P001 | Maize | plastid | 81.94 | 76.62 |
HORVU7Hr1G110290.1 | Barley | nucleus | 54.17 | 76.47 |
OQU87075 | Sorghum | nucleus | 81.25 | 76.47 |
TraesCS1B01G357600.1 | Wheat | nucleus | 76.39 | 76.39 |
Zm00001d005789_P001 | Maize | plastid | 80.56 | 76.32 |
TraesCS4A01G030400.1 | Wheat | nucleus | 81.25 | 75.97 |
Os01t0149600-01 | Rice | nucleus | 80.56 | 75.82 |
Os01t0152900-00 | Rice | nucleus | 80.56 | 75.82 |
TraesCS3A01G102500.1 | Wheat | nucleus | 75.69 | 75.69 |
TraesCS6A01G034500.1 | Wheat | nucleus | 75.69 | 75.69 |
TraesCS6A01G035000.1 | Wheat | nucleus | 75.69 | 75.69 |
TraesCS6B01G049300.1 | Wheat | nucleus | 75.69 | 75.69 |
TraesCS5A01G051900.1 | Wheat | nucleus | 81.94 | 75.64 |
EES07386 | Sorghum | nucleus | 81.25 | 75.48 |
Os01t0153300-00 | Rice | nucleus | 81.25 | 75.48 |
TraesCS5B01G058200.1 | Wheat | nucleus | 83.33 | 75.47 |
TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 83.33 | 75.47 |
TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 78.47 | 75.33 |
TraesCS6B01G048500.1 | Wheat | unclear | 75.69 | 75.17 |
Os01t0152300-00 | Rice | nucleus | 79.86 | 75.16 |
TraesCS6B01G048800.1 | Wheat | nucleus | 75.0 | 75.0 |
TraesCS6B01G049100.1 | Wheat | nucleus | 75.0 | 75.0 |
TraesCS6B01G082600.1 | Wheat | nucleus | 75.0 | 75.0 |
TraesCS1B01G416600.1 | Wheat | nucleus | 78.47 | 74.83 |
TraesCS1D01G194600.1 | Wheat | nucleus | 79.17 | 74.51 |
TraesCS6D01G040600.1 | Wheat | nucleus | 75.0 | 74.48 |
TraesCS6B01G084900.1 | Wheat | nucleus | 79.17 | 74.03 |
TraesCS3B01G390300.1 | Wheat | nucleus | 68.75 | 73.88 |
TraesCS1A01G388600.1 | Wheat | nucleus | 78.47 | 73.86 |
TraesCS6D01G040200.1 | Wheat | nucleus | 74.31 | 73.79 |
TraesCS1A01G361600.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1A01G367900.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1A01G368000.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1B01G386200.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1B01G386400.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1B01G386700.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1D01G366300.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1D01G373800.1 | Wheat | nucleus | 77.78 | 73.2 |
TraesCS1D01G373900.1 | Wheat | nucleus | 77.78 | 73.2 |
HORVU7Hr1G110130.1 | Barley | nucleus | 59.72 | 72.88 |
TraesCS1D01G232900.1 | Wheat | nucleus | 79.17 | 72.61 |
TraesCS1B01G378300.1 | Wheat | nucleus | 77.08 | 72.55 |
TraesCS1B01G386500.1 | Wheat | nucleus | 77.08 | 72.55 |
TraesCS1B01G386600.1 | Wheat | nucleus | 77.08 | 72.55 |
TraesCS6B01G376900.1 | Wheat | nucleus | 76.39 | 72.37 |
HORVU6Hr1G005950.2 | Barley | nucleus | 77.78 | 72.26 |
HORVU7Hr1G110330.2 | Barley | nucleus | 59.03 | 71.43 |
TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 76.39 | 71.43 |
HORVU6Hr1G008320.1 | Barley | nucleus | 77.78 | 71.34 |
TraesCSU01G081100.1 | Wheat | nucleus | 75.69 | 70.78 |
TraesCS5D01G393900.1 | Wheat | nucleus | 79.86 | 70.12 |
HORVU1Hr1G072190.4 | Barley | nucleus | 85.42 | 69.89 |
HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 78.47 | 69.33 |
HORVU3Hr1G013530.1 | Barley | nucleus | 78.47 | 68.9 |
Solyc10g044580.1.1 | Tomato | nucleus | 64.58 | 68.89 |
HORVU1Hr1G091370.1 | Barley | nucleus | 75.69 | 68.55 |
HORVU7Hr1G110190.1 | Barley | nucleus | 62.5 | 68.18 |
HORVU4Hr1G070240.1 | Barley | nucleus | 78.47 | 68.07 |
HORVU4Hr1G009040.2 | Barley | nucleus | 81.25 | 68.02 |
HORVU7Hr1G110170.1 | Barley | nucleus | 75.69 | 66.87 |
HORVU2Hr1G077630.1 | Barley | nucleus | 83.33 | 66.3 |
HORVU3Hr1G013680.1 | Barley | nucleus | 77.78 | 65.88 |
HORVU1Hr1G058500.1 | Barley | nucleus | 82.64 | 65.03 |
HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 52.78 | 64.96 |
HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 81.94 | 64.48 |
HORVU1Hr1G085540.1 | Barley | nucleus | 79.86 | 64.25 |
HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 75.69 | 63.01 |
HORVU1Hr1G078480.6 | Barley | nucleus | 77.78 | 62.22 |
HORVU1Hr1G078530.3 | Barley | nucleus | 77.78 | 62.22 |
HORVU6Hr1G083110.1 | Barley | nucleus | 72.22 | 60.82 |
VIT_06s0004g04240.t01 | Wine grape | nucleus | 95.14 | 59.57 |
HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 84.03 | 57.08 |
HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 81.94 | 56.46 |
Os08t0490900-00 | Rice | nucleus | 82.64 | 56.13 |
HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 81.94 | 55.92 |
HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 67.36 | 52.72 |
GSMUA_Achr6P33320_001 | Banana | nucleus | 74.31 | 51.69 |
HORVU3Hr1G086610.2 | Barley | nucleus | 75.0 | 51.43 |
Zm00001d048491_P001 | Maize | plastid | 82.64 | 50.0 |
HORVU1Hr1G066130.1 | Barley | nucleus | 83.33 | 49.38 |
TraesCS6B01G081700.1 | Wheat | nucleus | 54.17 | 47.56 |
TraesCS6D01G063200.1 | Wheat | nucleus | 54.86 | 39.9 |
TraesCS6A01G061400.1 | Wheat | nucleus | 54.17 | 37.32 |
Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 52.78 | 26.86 |
Protein Annotations
Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
UniProt:K4D553 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF172 |
SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc11g007920.1 | EnsemblPlants:Solyc11g007920.1.1 | UniParc:UPI000276A5B7 | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4D553]
Coordinates
chr11:-:2160950..2161384
Molecular Weight (calculated)
15817.5 Da
IEP (calculated)
10.851
GRAVY (calculated)
-0.692
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKSEKKPA EKKPAEKTPV AEKAPAEKKP KAGKKLPKDA AAGDKKKKRS KKAVETYKIY IFKVLKQVHP DIGISSKAMG IMNSFINDIF EKLAQEASRL
101: ARYNKKPTIT SREIQTAVRL VLPGELAKHA VSEGTKAVTK FTSS
101: ARYNKKPTIT SREIQTAVRL VLPGELAKHA VSEGTKAVTK FTSS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.