Factsheet for Os01t0153100-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
extracellular: 26072143
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0152900-00	Rice	nucleus	97.39	97.39
Os01t0153300-00	Rice	nucleus	98.04	96.77
Os05t0574300-00	Rice	nucleus	96.08	96.71
Os01t0149600-01	Rice	nucleus	96.08	96.08
Os01t0152300-00	Rice	nucleus	94.77	94.77
Zm00001d050100_P001	Maize	plastid	92.81	94.67
EES15092	Sorghum	nucleus	92.81	94.04
Zm00001d025913_P001	Maize	plastid	90.85	92.67
Zm00001d032070_P001	Maize	plastid	90.2	92.0
GSMUA_Achr9P04060_001	Banana	nucleus	69.93	91.45
Os05t0460475-00	Rice	nucleus	62.09	89.62
Os01t0839500-00	Rice	nucleus	80.39	88.49
KRH26542	Soybean	nucleus	76.47	87.31
KRH22818	Soybean	nucleus	75.82	87.22
KRH19721	Soybean	nucleus	78.43	86.33
Bra007018.1-P	Field mustard	nucleus	77.78	86.23
Os03t0279000-00	Rice	nucleus	85.62	86.18
Bra039810.1-P	Field mustard	nucleus	77.12	85.51
KRH67549	Soybean	nucleus	77.12	85.51
KRG95819	Soybean	nucleus	77.12	85.51
Solyc03g071620.1.1	Tomato	nucleus	78.43	85.11
PGSC0003DMT400043578	Potato	nucleus	78.43	85.11
AT2G37470.1	Thale cress	nucleus	76.47	84.78
KRG92106	Soybean	nucleus	75.16	84.56
PGSC0003DMT400070383	Potato	nucleus	78.43	84.51
Solyc06g075800.1.1	Tomato	nucleus	80.39	84.25
PGSC0003DMT400077939	Potato	nucleus	80.39	84.25
VIT_06s0004g04230.t01	Wine grape	nucleus	80.39	84.25
AT3G46030.1	Thale cress	nucleus	79.74	84.14
Bra003150.1-P	Field mustard	nucleus	75.82	84.06
AT5G59910.1	Thale cress	nucleus	82.35	84.0
KRH34681	Soybean	nucleus	75.16	83.94
Bra038267.1-P	Field mustard	nucleus	75.16	83.94
Bra006685.1-P	Field mustard	nucleus	77.12	83.69
VIT_13s0019g05370.t01	Wine grape	nucleus	79.08	83.45
PGSC0003DMT400070382	Potato	nucleus	78.43	83.33
Solyc11g007930.1.1	Tomato	nucleus	75.16	83.33
AT5G02570.1	Thale cress	nucleus	71.9	83.33
AT3G53650.1	Thale cress	nucleus	75.16	83.33
Bra002520.1-P	Field mustard	nucleus	81.7	83.33
VIT_06s0004g04250.t01	Wine grape	nucleus	80.39	83.11
Bra020275.1-P	Field mustard	nucleus	77.12	83.1
Solyc11g066430.1.1	Tomato	nucleus	75.82	82.86
AT2G28720.1	Thale cress	nucleus	81.7	82.78
AT3G45980.1	Thale cress	nucleus	81.05	82.67
Solyc11g007920.1.1	Tomato	nucleus	77.78	82.64
KRH29833	Soybean	nucleus	77.12	82.52
GSMUA_Achr2P19080_001	Banana	nucleus	77.12	82.52
KRH29836	Soybean	nucleus	79.74	82.43
KRH29832	Soybean	nucleus	79.74	82.43
KRH29831	Soybean	nucleus	79.74	82.43
Solyc06g074790.1.1	Tomato	nucleus	76.47	82.39
PGSC0003DMT400074994	Potato	nucleus	79.08	82.31
Solyc06g005390.1.1	Tomato	nucleus	79.08	82.31
Bra002436.1-P	Field mustard	nucleus	75.82	82.27
PGSC0003DMT400022074	Potato	nucleus	77.12	81.94
PGSC0003DMT400022099	Potato	nucleus	77.12	81.94
KRH24833	Soybean	nucleus	79.74	81.88
Bra035677.1-P	Field mustard	nucleus	79.74	81.88
KRH24831	Soybean	nucleus	79.74	81.88
Bra011930.1-P	Field mustard	nucleus	79.74	81.88
AT3G09480.1	Thale cress	nucleus	67.32	81.75
PGSC0003DMT400060096	Potato	nucleus	78.43	81.63
Solyc12g013510.1.1	Tomato	nucleus	73.86	81.3
KRH24830	Soybean	nucleus	79.08	81.21
AT1G07790.1	Thale cress	nucleus	78.43	81.08
PGSC0003DMT400018456	Potato	nucleus	75.16	80.99
PGSC0003DMT400001108	Potato	nucleus	75.16	80.99
Solyc05g055440.1.1	Tomato	nucleus	77.78	80.95
AT5G22880.1	Thale cress	nucleus	76.47	80.69
Solyc02g038690.1.1	Tomato	nucleus	70.59	80.6
Bra006639.1-P	Field mustard	nucleus	75.82	80.56
PGSC0003DMT400018455	Potato	nucleus	75.16	80.42
VIT_06s0004g04300.t01	Wine grape	nucleus	79.74	80.26
Solyc06g074780.1.1	Tomato	nucleus	74.51	79.72
Bra000483.1-P	Field mustard	nucleus	80.39	79.35
GSMUA_Achr7P15260_001	Banana	nucleus	77.12	77.63
PGSC0003DMT400074020	Potato	nucleus	64.71	73.33
CDX71015	Canola	nucleus	29.41	68.18
Os08t0490900-00	Rice	nucleus	89.54	64.62
Solyc10g044580.1.1	Tomato	nucleus	55.56	62.96
TraesCS6B01G081700.1	Wheat	nucleus	58.17	54.27
VIT_06s0004g04240.t01	Wine grape	nucleus	81.05	53.91
GSMUA_Achr6P33320_001	Banana	nucleus	67.97	50.24
TraesCS6D01G063200.1	Wheat	nucleus	63.4	48.99
TraesCS6A01G061400.1	Wheat	nucleus	64.71	47.37
Os09t0570850-00	Rice	nucleus	37.25	37.5
PGSC0003DMT400074018	Potato	nucleus	55.56	22.31

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:4324502	ProteinID:BAB03632.1	ProteinID:BAB44053.1	ProteinID:BAF03965.1
ProteinID:BAS70450.1	ProteinID:EAZ10581.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
EnsemblPlantsGene:Os01g0153100	EnsemblPlants:Os01t0153100-00	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428
PANTHER:PTHR23428:SF175	UniProt:Q9LGH4	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000009DAB3	RefSeq:XP_015621595.1
SEG:seg	:	:	:	:	:

Description

F-box protein 2Similar to Histone H2B-3 (Fragment). (Os01t0153100-00)

Coordinates

chr1:-:2857382..2858128

Molecular Weight (calculated)

16473.2 Da

IEP (calculated)

10.768

GRAVY (calculated)

-0.688

Length

153 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AKKPAEEEPA AEKAEKAPAG KKPKAEKRLP AGKGEKGSGE GKKAGRKKGK KSVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAAEAAKLA RYNKKPTITS REIQTAVRLV LPGELAKHAV SEGTKAVTKF TSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.