Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050100_P001 | Maize | plastid | 98.0 | 98.0 |
| Zm00001d032070_P001 | Maize | plastid | 96.67 | 96.67 |
| EES15092 | Sorghum | nucleus | 96.67 | 96.03 |
| Zm00001d011236_P001 | Maize | plastid | 94.67 | 94.67 |
| Os05t0574300-00 | Rice | nucleus | 94.0 | 92.76 |
| Zm00001d005789_P001 | Maize | plastid | 94.0 | 92.76 |
| Zm00001d007084_P001 | Maize | plastid | 94.0 | 92.76 |
| Zm00001d020580_P001 | Maize | plastid | 93.33 | 92.72 |
| Zm00001d012423_P001 | Maize | plastid | 84.67 | 92.7 |
| Zm00001d039821_P001 | Maize | plastid | 92.0 | 92.62 |
| Zm00001d042930_P001 | Maize | plastid | 84.0 | 91.97 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 71.33 | 91.45 |
| Zm00001d051591_P001 | Maize | plastid | 93.33 | 90.91 |
| Os01t0153100-00 | Rice | nucleus | 92.67 | 90.85 |
| Os01t0152900-00 | Rice | nucleus | 92.67 | 90.85 |
| Os01t0153300-00 | Rice | nucleus | 93.33 | 90.32 |
| Os01t0149600-01 | Rice | nucleus | 92.0 | 90.2 |
| Os01t0152300-00 | Rice | nucleus | 91.33 | 89.54 |
| Zm00001d044247_P001 | Maize | plastid | 88.0 | 89.19 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 91.33 | 88.96 |
| KRH26542 | Soybean | nucleus | 77.33 | 86.57 |
| KRH22818 | Soybean | nucleus | 76.0 | 85.71 |
| KRH19721 | Soybean | nucleus | 78.67 | 84.89 |
| Bra007018.1-P | Field mustard | nucleus | 78.0 | 84.78 |
| KRG92106 | Soybean | nucleus | 76.67 | 84.56 |
| AT2G37470.1 | Thale cress | nucleus | 77.33 | 84.06 |
| KRH67549 | Soybean | nucleus | 77.33 | 84.06 |
| KRG95819 | Soybean | nucleus | 77.33 | 84.06 |
| Bra039810.1-P | Field mustard | nucleus | 77.33 | 84.06 |
| KRH34681 | Soybean | nucleus | 76.67 | 83.94 |
| PGSC0003DMT400043578 | Potato | nucleus | 78.67 | 83.69 |
| Solyc03g071620.1.1 | Tomato | nucleus | 78.67 | 83.69 |
| Solyc06g075800.1.1 | Tomato | nucleus | 81.33 | 83.56 |
| PGSC0003DMT400077939 | Potato | nucleus | 81.33 | 83.56 |
| Bra003150.1-P | Field mustard | nucleus | 76.0 | 82.61 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 80.0 | 82.19 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 79.33 | 82.07 |
| AT3G46030.1 | Thale cress | nucleus | 79.33 | 82.07 |
| AT5G59910.1 | Thale cress | nucleus | 82.0 | 82.0 |
| Bra038267.1-P | Field mustard | nucleus | 74.67 | 81.75 |
| Bra006685.1-P | Field mustard | nucleus | 76.67 | 81.56 |
| Bra002520.1-P | Field mustard | nucleus | 81.33 | 81.33 |
| PGSC0003DMT400070382 | Potato | nucleus | 78.0 | 81.25 |
| AT3G53650.1 | Thale cress | nucleus | 74.67 | 81.16 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 77.33 | 81.12 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 80.0 | 81.08 |
| AT5G02570.1 | Thale cress | nucleus | 71.33 | 81.06 |
| Solyc06g074790.1.1 | Tomato | nucleus | 76.67 | 80.99 |
| PGSC0003DMT400070383 | Potato | nucleus | 76.67 | 80.99 |
| Bra020275.1-P | Field mustard | nucleus | 76.67 | 80.99 |
| AT2G28720.1 | Thale cress | nucleus | 81.33 | 80.79 |
| AT3G45980.1 | Thale cress | nucleus | 80.67 | 80.67 |
| Solyc11g007920.1.1 | Tomato | nucleus | 77.33 | 80.56 |
| Solyc06g005390.1.1 | Tomato | nucleus | 78.67 | 80.27 |
| PGSC0003DMT400074994 | Potato | nucleus | 78.67 | 80.27 |
| AT3G09480.1 | Thale cress | nucleus | 67.33 | 80.16 |
| Bra002436.1-P | Field mustard | nucleus | 75.33 | 80.14 |
| Solyc11g066430.1.1 | Tomato | nucleus | 74.67 | 80.0 |
| Bra011930.1-P | Field mustard | nucleus | 79.33 | 79.87 |
| Bra035677.1-P | Field mustard | nucleus | 79.33 | 79.87 |
| KRH29836 | Soybean | nucleus | 78.67 | 79.73 |
| KRH29832 | Soybean | nucleus | 78.67 | 79.73 |
| KRH29831 | Soybean | nucleus | 78.67 | 79.73 |
| KRH29833 | Soybean | nucleus | 76.0 | 79.72 |
| Solyc11g007930.1.1 | Tomato | nucleus | 73.33 | 79.71 |
| PGSC0003DMT400060096 | Potato | nucleus | 78.0 | 79.59 |
| PGSC0003DMT400018456 | Potato | nucleus | 75.33 | 79.58 |
| AT5G22880.1 | Thale cress | nucleus | 76.67 | 79.31 |
| KRH24831 | Soybean | nucleus | 78.67 | 79.19 |
| KRH24833 | Soybean | nucleus | 78.67 | 79.19 |
| PGSC0003DMT400022099 | Potato | nucleus | 76.0 | 79.17 |
| PGSC0003DMT400022074 | Potato | nucleus | 76.0 | 79.17 |
| AT1G07790.1 | Thale cress | nucleus | 78.0 | 79.05 |
| PGSC0003DMT400018455 | Potato | nucleus | 75.33 | 79.02 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 80.0 | 78.95 |
| Solyc05g055440.1.1 | Tomato | nucleus | 77.33 | 78.91 |
| KRH24830 | Soybean | nucleus | 78.0 | 78.52 |
| Bra006639.1-P | Field mustard | nucleus | 75.33 | 78.47 |
| Solyc12g013510.1.1 | Tomato | nucleus | 72.67 | 78.42 |
| Solyc06g074780.1.1 | Tomato | nucleus | 74.67 | 78.32 |
| PGSC0003DMT400001108 | Potato | nucleus | 74.0 | 78.17 |
| Solyc02g038690.1.1 | Tomato | nucleus | 69.33 | 77.61 |
| Bra000483.1-P | Field mustard | nucleus | 80.0 | 77.42 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 77.33 | 76.32 |
| PGSC0003DMT400074020 | Potato | nucleus | 63.33 | 70.37 |
| CDX71015 | Canola | nucleus | 28.67 | 65.15 |
| Os08t0490900-00 | Rice | nucleus | 88.67 | 62.74 |
| Solyc10g044580.1.1 | Tomato | nucleus | 54.67 | 60.74 |
| Zm00001d048491_P001 | Maize | plastid | 94.0 | 59.24 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 59.33 | 54.27 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 80.67 | 52.61 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 69.33 | 50.24 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 63.33 | 47.98 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 64.0 | 45.93 |
| Zm00001d005322_P001 | Maize | nucleus | 41.33 | 23.66 |
| PGSC0003DMT400074018 | Potato | nucleus | 56.0 | 22.05 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100501458 | MapMan:12.1.3 | ProteinID:AQK44998.1 | UniProt:B6SIF9 | EMBL:BT085332 |
| EMBL:EU952524 | EMBL:EU954291 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF175 | SMART:SM00427 |
| SUPFAM:SSF47113 | UniParc:UPI0001817F8F | EnsemblPlantsGene:Zm00001d025913 | EnsemblPlants:Zm00001d025913_P001 | EnsemblPlants:Zm00001d025913_T001 | SEG:seg |
Description
Histone H2B
Coordinates
chr10:-:133665354..133665806
Molecular Weight (calculated)
16144.8 Da
IEP (calculated)
10.795
GRAVY (calculated)
-0.647
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA AEKAPAGKKP KAEKRVPAGK SAAKEGGEGK RGKKKGKKSV ETYKIYIFKV LKQVHPDIGI SSKAMSIMNS FINDIFEKLA
101: AEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSA
101: AEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSA
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.