Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU92807 | Sorghum | nucleus | 98.65 | 98.65 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 92.57 | 96.48 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 95.95 | 95.3 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 95.95 | 95.3 |
| Zm00001d012423_P001 | Maize | plastid | 87.84 | 94.89 |
| Zm00001d042930_P001 | Maize | plastid | 87.16 | 94.16 |
| Zm00001d039821_P001 | Maize | plastid | 93.24 | 92.62 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 72.97 | 92.31 |
| Zm00001d032070_P001 | Maize | plastid | 91.89 | 90.67 |
| Zm00001d011236_P001 | Maize | plastid | 91.22 | 90.0 |
| Zm00001d007084_P001 | Maize | plastid | 91.89 | 89.47 |
| Zm00001d005789_P001 | Maize | plastid | 91.22 | 88.82 |
| Zm00001d051591_P001 | Maize | plastid | 91.89 | 88.31 |
| Zm00001d020580_P001 | Maize | plastid | 89.86 | 88.08 |
| Zm00001d025913_P001 | Maize | plastid | 89.19 | 88.0 |
| Zm00001d050100_P001 | Maize | plastid | 89.19 | 88.0 |
| KRH22818 | Soybean | nucleus | 79.05 | 87.97 |
| Os03t0279000-00 | Rice | nucleus | 89.86 | 87.5 |
| KRH26542 | Soybean | nucleus | 79.05 | 87.31 |
| Bra007018.1-P | Field mustard | nucleus | 80.41 | 86.23 |
| Bra039810.1-P | Field mustard | nucleus | 80.41 | 86.23 |
| KRH19721 | Soybean | nucleus | 80.41 | 85.61 |
| Bra003150.1-P | Field mustard | nucleus | 79.73 | 85.51 |
| KRG92106 | Soybean | nucleus | 78.38 | 85.29 |
| KRH67549 | Soybean | nucleus | 79.05 | 84.78 |
| KRG95819 | Soybean | nucleus | 79.05 | 84.78 |
| AT2G37470.1 | Thale cress | nucleus | 79.05 | 84.78 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 81.76 | 84.62 |
| PGSC0003DMT400043578 | Potato | nucleus | 80.41 | 84.4 |
| PGSC0003DMT400077939 | Potato | nucleus | 83.11 | 84.25 |
| PGSC0003DMT400070382 | Potato | nucleus | 81.76 | 84.03 |
| KRH34681 | Soybean | nucleus | 77.7 | 83.94 |
| Solyc03g071620.1.1 | Tomato | nucleus | 79.73 | 83.69 |
| Bra006685.1-P | Field mustard | nucleus | 79.73 | 83.69 |
| Solyc06g075800.1.1 | Tomato | nucleus | 82.43 | 83.56 |
| AT5G02570.1 | Thale cress | nucleus | 74.32 | 83.33 |
| Bra038267.1-P | Field mustard | nucleus | 77.03 | 83.21 |
| PGSC0003DMT400070383 | Potato | nucleus | 79.73 | 83.1 |
| PGSC0003DMT400060096 | Potato | nucleus | 82.43 | 82.99 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 81.76 | 82.88 |
| Solyc11g066430.1.1 | Tomato | nucleus | 78.38 | 82.86 |
| AT3G46030.1 | Thale cress | nucleus | 81.08 | 82.76 |
| AT5G59910.1 | Thale cress | nucleus | 83.78 | 82.67 |
| Bra002520.1-P | Field mustard | nucleus | 83.78 | 82.67 |
| Solyc11g007920.1.1 | Tomato | nucleus | 80.41 | 82.64 |
| Bra006639.1-P | Field mustard | nucleus | 80.41 | 82.64 |
| Solyc06g074790.1.1 | Tomato | nucleus | 79.05 | 82.39 |
| Solyc05g055440.1.1 | Tomato | nucleus | 81.76 | 82.31 |
| Bra002436.1-P | Field mustard | nucleus | 78.38 | 82.27 |
| PGSC0003DMT400022074 | Potato | nucleus | 79.73 | 81.94 |
| Solyc11g007930.1.1 | Tomato | nucleus | 76.35 | 81.88 |
| AT3G53650.1 | Thale cress | nucleus | 76.35 | 81.88 |
| KRH29831 | Soybean | nucleus | 81.76 | 81.76 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 81.76 | 81.76 |
| KRH29832 | Soybean | nucleus | 81.76 | 81.76 |
| KRH29836 | Soybean | nucleus | 81.76 | 81.76 |
| Bra020275.1-P | Field mustard | nucleus | 78.38 | 81.69 |
| PGSC0003DMT400018456 | Potato | nucleus | 78.38 | 81.69 |
| PGSC0003DMT400074994 | Potato | nucleus | 81.08 | 81.63 |
| Solyc06g005390.1.1 | Tomato | nucleus | 81.08 | 81.63 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 79.73 | 81.38 |
| AT3G45980.1 | Thale cress | nucleus | 82.43 | 81.33 |
| PGSC0003DMT400022099 | Potato | nucleus | 79.05 | 81.25 |
| KRH24833 | Soybean | nucleus | 81.76 | 81.21 |
| KRH24831 | Soybean | nucleus | 81.76 | 81.21 |
| KRH29833 | Soybean | nucleus | 78.38 | 81.12 |
| PGSC0003DMT400001108 | Potato | nucleus | 77.7 | 80.99 |
| AT3G09480.1 | Thale cress | nucleus | 68.92 | 80.95 |
| AT2G28720.1 | Thale cress | nucleus | 82.43 | 80.79 |
| AT5G22880.1 | Thale cress | nucleus | 79.05 | 80.69 |
| Bra035677.1-P | Field mustard | nucleus | 81.08 | 80.54 |
| KRH24830 | Soybean | nucleus | 81.08 | 80.54 |
| Solyc06g074780.1.1 | Tomato | nucleus | 77.7 | 80.42 |
| PGSC0003DMT400018455 | Potato | nucleus | 77.7 | 80.42 |
| Bra011930.1-P | Field mustard | nucleus | 80.41 | 79.87 |
| Solyc12g013510.1.1 | Tomato | nucleus | 75.0 | 79.86 |
| Solyc02g038690.1.1 | Tomato | nucleus | 72.3 | 79.85 |
| AT1G07790.1 | Thale cress | nucleus | 79.73 | 79.73 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 81.08 | 78.95 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 79.73 | 77.63 |
| Bra000483.1-P | Field mustard | nucleus | 80.41 | 76.77 |
| PGSC0003DMT400074020 | Potato | nucleus | 65.54 | 71.85 |
| CDX71015 | Canola | nucleus | 29.05 | 65.15 |
| Solyc10g044580.1.1 | Tomato | nucleus | 57.43 | 62.96 |
| Zm00001d048491_P001 | Maize | plastid | 93.92 | 58.4 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 82.43 | 53.04 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 70.27 | 50.24 |
| Zm00001d005322_P001 | Maize | nucleus | 42.57 | 24.05 |
| PGSC0003DMT400074018 | Potato | nucleus | 56.76 | 22.05 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100274083 | MapMan:12.1.3 | UniProt:B4FYZ0 | EMBL:BT042328 | EMBL:EU952326 |
| EMBL:EU952695 | EMBL:EU954030 | EMBL:EU961572 | EMBL:EU969485 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2B | InterPro:IPR009072 | ProteinID:ONM40544.1 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF84 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI00017B748A | EnsemblPlantsGene:Zm00001d044247 |
| EnsemblPlants:Zm00001d044247_P001 | EnsemblPlants:Zm00001d044247_T001 | SEG:seg | : | : | : |
Description
thioredoxin h homolog3
Coordinates
chr3:-:223001191..223001980
Molecular Weight (calculated)
16142.8 Da
IEP (calculated)
10.796
GRAVY (calculated)
-0.761
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKKPAAEEKA EKTTAGKKPK AEKRLPASKS SGKEGGEKKG KKKAKKSVET YKIYIFKVLK QVHPDIGISS KAMSIMNSFI NDIFEKLAGE
101: AAKLARYNKK PTITSREIQT SVRLVLPGEL AKHAVSEGTK AVTKFTSN
101: AAKLARYNKK PTITSREIQT SVRLVLPGEL AKHAVSEGTK AVTKFTSN
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.