Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020580_P001 | Maize | plastid | 96.0 | 95.36 |
| Zm00001d005789_P001 | Maize | plastid | 96.0 | 94.74 |
| Zm00001d025913_P001 | Maize | plastid | 94.67 | 94.67 |
| Zm00001d050100_P001 | Maize | plastid | 94.0 | 94.0 |
| Zm00001d039821_P001 | Maize | plastid | 93.33 | 93.96 |
| Zm00001d012423_P001 | Maize | plastid | 85.33 | 93.43 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 72.67 | 93.16 |
| Zm00001d007084_P001 | Maize | plastid | 94.0 | 92.76 |
| Zm00001d042930_P001 | Maize | plastid | 84.67 | 92.7 |
| Zm00001d032070_P001 | Maize | plastid | 92.67 | 92.67 |
| Zm00001d051591_P001 | Maize | plastid | 94.67 | 92.21 |
| Zm00001d044247_P001 | Maize | plastid | 90.0 | 91.22 |
| KRH26542 | Soybean | nucleus | 78.67 | 88.06 |
| KRH22818 | Soybean | nucleus | 78.0 | 87.97 |
| KRH19721 | Soybean | nucleus | 80.67 | 87.05 |
| Solyc03g071620.1.1 | Tomato | nucleus | 81.33 | 86.52 |
| PGSC0003DMT400043578 | Potato | nucleus | 81.33 | 86.52 |
| KRG95819 | Soybean | nucleus | 79.33 | 86.23 |
| Bra007018.1-P | Field mustard | nucleus | 79.33 | 86.23 |
| KRH67549 | Soybean | nucleus | 79.33 | 86.23 |
| PGSC0003DMT400077939 | Potato | nucleus | 83.33 | 85.62 |
| Solyc06g075800.1.1 | Tomato | nucleus | 83.33 | 85.62 |
| Bra039810.1-P | Field mustard | nucleus | 78.67 | 85.51 |
| KRG92106 | Soybean | nucleus | 77.33 | 85.29 |
| KRH34681 | Soybean | nucleus | 77.33 | 84.67 |
| AT2G37470.1 | Thale cress | nucleus | 77.33 | 84.06 |
| PGSC0003DMT400070382 | Potato | nucleus | 80.67 | 84.03 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 80.0 | 83.92 |
| PGSC0003DMT400070383 | Potato | nucleus | 79.33 | 83.8 |
| Bra006685.1-P | Field mustard | nucleus | 78.67 | 83.69 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 81.33 | 83.56 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 80.67 | 83.45 |
| AT3G46030.1 | Thale cress | nucleus | 80.67 | 83.45 |
| AT5G59910.1 | Thale cress | nucleus | 83.33 | 83.33 |
| AT5G02570.1 | Thale cress | nucleus | 73.33 | 83.33 |
| AT3G53650.1 | Thale cress | nucleus | 76.67 | 83.33 |
| Bra003150.1-P | Field mustard | nucleus | 76.67 | 83.33 |
| Bra038267.1-P | Field mustard | nucleus | 76.0 | 83.21 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 82.0 | 83.11 |
| Bra002520.1-P | Field mustard | nucleus | 82.67 | 82.67 |
| Solyc11g007920.1.1 | Tomato | nucleus | 79.33 | 82.64 |
| Solyc11g007930.1.1 | Tomato | nucleus | 76.0 | 82.61 |
| KRH29833 | Soybean | nucleus | 78.67 | 82.52 |
| KRH29836 | Soybean | nucleus | 81.33 | 82.43 |
| KRH29832 | Soybean | nucleus | 81.33 | 82.43 |
| KRH29831 | Soybean | nucleus | 81.33 | 82.43 |
| Solyc06g074790.1.1 | Tomato | nucleus | 78.0 | 82.39 |
| Bra020275.1-P | Field mustard | nucleus | 78.0 | 82.39 |
| Bra002436.1-P | Field mustard | nucleus | 77.33 | 82.27 |
| Solyc11g066430.1.1 | Tomato | nucleus | 76.67 | 82.14 |
| AT2G28720.1 | Thale cress | nucleus | 82.67 | 82.12 |
| AT3G45980.1 | Thale cress | nucleus | 82.0 | 82.0 |
| PGSC0003DMT400022099 | Potato | nucleus | 78.67 | 81.94 |
| KRH24831 | Soybean | nucleus | 81.33 | 81.88 |
| KRH24833 | Soybean | nucleus | 81.33 | 81.88 |
| AT3G09480.1 | Thale cress | nucleus | 68.67 | 81.75 |
| PGSC0003DMT400074994 | Potato | nucleus | 80.0 | 81.63 |
| PGSC0003DMT400060096 | Potato | nucleus | 80.0 | 81.63 |
| Solyc06g005390.1.1 | Tomato | nucleus | 80.0 | 81.63 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 82.67 | 81.58 |
| Solyc12g013510.1.1 | Tomato | nucleus | 75.33 | 81.3 |
| PGSC0003DMT400022074 | Potato | nucleus | 78.0 | 81.25 |
| Bra011930.1-P | Field mustard | nucleus | 80.67 | 81.21 |
| Bra035677.1-P | Field mustard | nucleus | 80.67 | 81.21 |
| KRH24830 | Soybean | nucleus | 80.67 | 81.21 |
| AT1G07790.1 | Thale cress | nucleus | 80.0 | 81.08 |
| PGSC0003DMT400018456 | Potato | nucleus | 76.67 | 80.99 |
| Solyc05g055440.1.1 | Tomato | nucleus | 79.33 | 80.95 |
| AT5G22880.1 | Thale cress | nucleus | 78.0 | 80.69 |
| Solyc02g038690.1.1 | Tomato | nucleus | 72.0 | 80.6 |
| Bra006639.1-P | Field mustard | nucleus | 77.33 | 80.56 |
| PGSC0003DMT400018455 | Potato | nucleus | 76.67 | 80.42 |
| Solyc06g074780.1.1 | Tomato | nucleus | 76.67 | 80.42 |
| PGSC0003DMT400001108 | Potato | nucleus | 76.0 | 80.28 |
| Bra000483.1-P | Field mustard | nucleus | 81.33 | 78.71 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 79.33 | 78.29 |
| PGSC0003DMT400074020 | Potato | nucleus | 65.33 | 72.59 |
| CDX71015 | Canola | nucleus | 29.33 | 66.67 |
| Solyc10g044580.1.1 | Tomato | nucleus | 56.0 | 62.22 |
| Zm00001d048491_P001 | Maize | plastid | 94.67 | 59.66 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 82.0 | 53.48 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 70.0 | 50.72 |
| Zm00001d005322_P001 | Maize | nucleus | 42.0 | 24.05 |
| PGSC0003DMT400074018 | Potato | nucleus | 57.33 | 22.57 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100192792 | MapMan:12.1.3 | ProteinID:AQK96313.1 | UniProt:B4FCM8 | EMBL:BT034866 |
| EMBL:EU967422 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 |
| PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 |
| UniParc:UPI0000E646E6 | EnsemblPlantsGene:Zm00001d011236 | EnsemblPlants:Zm00001d011236_P001 | EnsemblPlants:Zm00001d011236_T001 | SEG:seg | : |
Description
Histone H2B
Coordinates
chr8:-:144142073..144142525
Molecular Weight (calculated)
16190.8 Da
IEP (calculated)
10.769
GRAVY (calculated)
-0.665
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA TEKAEKAPAG KKPKAEKRLP AGKSGAGEGK KGKKKAKKSV ETYKIYIFKV LKQVHPDIGI SSKAMSIMNS FINDIFEKLA
101: AEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: AEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.