Factsheet for Zm00001d005789_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96770	Sorghum	nucleus	98.68	98.04
Zm00001d020580_P001	Maize	plastid	95.39	96.03
Zm00001d011236_P001	Maize	plastid	94.74	96.0
Zm00001d050100_P001	Maize	plastid	93.42	94.67
Zm00001d025913_P001	Maize	plastid	92.76	94.0
OQU87075	Sorghum	nucleus	94.08	93.46
Zm00001d007084_P001	Maize	plastid	93.42	93.42
Zm00001d032070_P001	Maize	plastid	92.11	93.33
Zm00001d039821_P001	Maize	plastid	91.45	93.29
Zm00001d051591_P001	Maize	plastid	94.08	92.86
Zm00001d012423_P001	Maize	plastid	82.89	91.97
Zm00001d042930_P001	Maize	plastid	82.24	91.24
Zm00001d044247_P001	Maize	plastid	88.82	91.22
GSMUA_Achr9P04060_001	Banana	nucleus	69.74	90.6
Bra007018.1-P	Field mustard	nucleus	78.29	86.23
KRH26542	Soybean	nucleus	75.66	85.82
KRH22818	Soybean	nucleus	75.0	85.71
Bra039810.1-P	Field mustard	nucleus	77.63	85.51
KRG95819	Soybean	nucleus	76.97	84.78
KRH67549	Soybean	nucleus	76.97	84.78
AT2G37470.1	Thale cress	nucleus	76.97	84.78
Solyc03g071620.1.1	Tomato	nucleus	78.29	84.4
PGSC0003DMT400043578	Potato	nucleus	78.29	84.4
PGSC0003DMT400077939	Potato	nucleus	80.92	84.25
Solyc06g075800.1.1	Tomato	nucleus	80.92	84.25
KRH19721	Soybean	nucleus	76.97	84.17
Bra038267.1-P	Field mustard	nucleus	75.66	83.94
KRH34681	Soybean	nucleus	75.66	83.94
KRG92106	Soybean	nucleus	75.0	83.82
AT3G46030.1	Thale cress	nucleus	79.61	83.45
Bra003150.1-P	Field mustard	nucleus	75.66	83.33
PGSC0003DMT400070383	Potato	nucleus	77.63	83.1
Bra006685.1-P	Field mustard	nucleus	76.97	82.98
Bra002520.1-P	Field mustard	nucleus	81.58	82.67
Solyc11g007930.1.1	Tomato	nucleus	75.0	82.61
AT3G53650.1	Thale cress	nucleus	75.0	82.61
AT5G02570.1	Thale cress	nucleus	71.71	82.58
GSMUA_Achr2P19080_001	Banana	nucleus	77.63	82.52
VIT_06s0004g04250.t01	Wine grape	nucleus	80.26	82.43
Solyc06g005390.1.1	Tomato	nucleus	79.61	82.31
PGSC0003DMT400074994	Potato	nucleus	79.61	82.31
Bra002436.1-P	Field mustard	nucleus	76.32	82.27
VIT_06s0004g04230.t01	Wine grape	nucleus	78.95	82.19
AT3G45980.1	Thale cress	nucleus	80.92	82.0
AT5G59910.1	Thale cress	nucleus	80.92	82.0
PGSC0003DMT400070382	Potato	nucleus	77.63	81.94
Solyc06g074790.1.1	Tomato	nucleus	76.32	81.69
AT2G28720.1	Thale cress	nucleus	80.92	81.46
Solyc11g066430.1.1	Tomato	nucleus	75.0	81.43
AT5G22880.1	Thale cress	nucleus	77.63	81.38
VIT_13s0019g05370.t01	Wine grape	nucleus	77.63	81.38
Solyc12g013510.1.1	Tomato	nucleus	74.34	81.3
PGSC0003DMT400022099	Potato	nucleus	76.97	81.25
PGSC0003DMT400022074	Potato	nucleus	76.97	81.25
Bra006639.1-P	Field mustard	nucleus	76.97	81.25
KRH29833	Soybean	nucleus	76.32	81.12
KRH29836	Soybean	nucleus	78.95	81.08
KRH29832	Soybean	nucleus	78.95	81.08
KRH29831	Soybean	nucleus	78.95	81.08
PGSC0003DMT400018456	Potato	nucleus	75.66	80.99
Bra020275.1-P	Field mustard	nucleus	75.66	80.99
PGSC0003DMT400060096	Potato	nucleus	78.29	80.95
AT3G09480.1	Thale cress	nucleus	67.11	80.95
Solyc02g038690.1.1	Tomato	nucleus	71.05	80.6
Solyc11g007920.1.1	Tomato	nucleus	76.32	80.56
KRH24833	Soybean	nucleus	78.95	80.54
Bra011930.1-P	Field mustard	nucleus	78.95	80.54
KRH24831	Soybean	nucleus	78.95	80.54
Bra035677.1-P	Field mustard	nucleus	78.95	80.54
Solyc05g055440.1.1	Tomato	nucleus	77.63	80.27
KRH24830	Soybean	nucleus	78.29	79.87
AT1G07790.1	Thale cress	nucleus	77.63	79.73
PGSC0003DMT400001108	Potato	nucleus	74.34	79.58
Solyc06g074780.1.1	Tomato	nucleus	73.68	78.32
PGSC0003DMT400018455	Potato	nucleus	73.68	78.32
Bra000483.1-P	Field mustard	nucleus	79.61	78.06
VIT_06s0004g04300.t01	Wine grape	nucleus	77.63	77.63
GSMUA_Achr7P15260_001	Banana	nucleus	76.32	76.32
PGSC0003DMT400074020	Potato	nucleus	63.82	71.85
CDX71015	Canola	nucleus	27.63	63.64
Solyc10g044580.1.1	Tomato	nucleus	53.95	60.74
Zm00001d048491_P001	Maize	plastid	93.42	59.66
VIT_06s0004g04240.t01	Wine grape	nucleus	79.61	52.61
GSMUA_Achr6P33320_001	Banana	nucleus	67.11	49.28
Zm00001d005322_P001	Maize	nucleus	40.79	23.66
PGSC0003DMT400074018	Potato	nucleus	55.92	22.31

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100274242	MapMan:12.1.3	UniProt:B4FZQ6	EMBL:BT042594	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	ProteinID:ONM22109.1	PFAM:PF00125	PRINTS:PR00621
ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF72	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI00017B820C
EnsemblPlantsGene:Zm00001d005789	EnsemblPlants:Zm00001d005789_P001	EnsemblPlants:Zm00001d005789_T001	SEG:seg	:	:

Description

histone 2B3 histone 2B3

Coordinates

chr2:+:188710662..188711219

Molecular Weight (calculated)

16364.0 Da

IEP (calculated)

10.796

GRAVY (calculated)

-0.704

Length

152 amino acids

Sequence
(BLAST)

001: MAPKADKKPA AKKPAEEPAT EKAEKAPAGK KPKAEKRLPA GKSAGKEGGE GKKGKKKAKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK
101: LAAESAKLAR YNKKPTVTSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.