Factsheet for Zm00001d050100_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15092	Sorghum	nucleus	98.67	98.01
Zm00001d025913_P001	Maize	plastid	98.0	98.0
Zm00001d032070_P001	Maize	plastid	97.33	97.33
Zm00001d007084_P001	Maize	plastid	96.0	94.74
Zm00001d011236_P001	Maize	plastid	94.0	94.0
Os05t0574300-00	Rice	nucleus	94.67	93.42
Zm00001d005789_P001	Maize	plastid	94.67	93.42
Zm00001d039821_P001	Maize	plastid	92.67	93.29
Zm00001d051591_P001	Maize	plastid	95.33	92.86
Os01t0153100-00	Rice	nucleus	94.67	92.81
Zm00001d020580_P001	Maize	plastid	93.33	92.72
Zm00001d012423_P001	Maize	plastid	84.67	92.7
GSMUA_Achr9P04060_001	Banana	nucleus	72.0	92.31
Zm00001d042930_P001	Maize	plastid	84.0	91.97
Os01t0152900-00	Rice	nucleus	93.33	91.5
Os01t0153300-00	Rice	nucleus	94.0	90.97
Os01t0149600-01	Rice	nucleus	92.67	90.85
TraesCS6B01G084900.1	Wheat	nucleus	92.0	89.61
Os01t0152300-00	Rice	nucleus	91.33	89.54
Zm00001d044247_P001	Maize	plastid	88.0	89.19
KRH26542	Soybean	nucleus	77.33	86.57
KRH22818	Soybean	nucleus	76.0	85.71
KRH19721	Soybean	nucleus	78.67	84.89
Bra007018.1-P	Field mustard	nucleus	78.0	84.78
Bra039810.1-P	Field mustard	nucleus	77.33	84.06
KRH67549	Soybean	nucleus	77.33	84.06
AT2G37470.1	Thale cress	nucleus	77.33	84.06
KRG95819	Soybean	nucleus	77.33	84.06
KRH34681	Soybean	nucleus	76.0	83.21
KRG92106	Soybean	nucleus	75.33	83.09
Solyc03g071620.1.1	Tomato	nucleus	78.0	82.98
PGSC0003DMT400043578	Potato	nucleus	78.0	82.98
VIT_06s0004g04230.t01	Wine grape	nucleus	80.67	82.88
Solyc06g075800.1.1	Tomato	nucleus	80.67	82.88
PGSC0003DMT400077939	Potato	nucleus	80.67	82.88
AT3G46030.1	Thale cress	nucleus	80.0	82.76
AT5G59910.1	Thale cress	nucleus	82.67	82.67
Bra003150.1-P	Field mustard	nucleus	76.0	82.61
Bra038267.1-P	Field mustard	nucleus	75.33	82.48
VIT_13s0019g05370.t01	Wine grape	nucleus	79.33	82.07
Bra002520.1-P	Field mustard	nucleus	82.0	82.0
AT3G53650.1	Thale cress	nucleus	75.33	81.88
GSMUA_Achr2P19080_001	Banana	nucleus	78.0	81.82
AT5G02570.1	Thale cress	nucleus	72.0	81.82
VIT_06s0004g04250.t01	Wine grape	nucleus	80.67	81.76
Bra020275.1-P	Field mustard	nucleus	77.33	81.69
PGSC0003DMT400070383	Potato	nucleus	77.33	81.69
Bra006685.1-P	Field mustard	nucleus	76.67	81.56
AT2G28720.1	Thale cress	nucleus	82.0	81.46
AT3G45980.1	Thale cress	nucleus	81.33	81.33
PGSC0003DMT400070382	Potato	nucleus	78.0	81.25
AT3G09480.1	Thale cress	nucleus	68.0	80.95
Solyc06g005390.1.1	Tomato	nucleus	79.33	80.95
PGSC0003DMT400074994	Potato	nucleus	79.33	80.95
Solyc11g066430.1.1	Tomato	nucleus	75.33	80.71
Solyc11g007920.1.1	Tomato	nucleus	77.33	80.56
Bra035677.1-P	Field mustard	nucleus	80.0	80.54
Bra011930.1-P	Field mustard	nucleus	80.0	80.54
Solyc11g007930.1.1	Tomato	nucleus	74.0	80.43
KRH29833	Soybean	nucleus	76.67	80.42
KRH29836	Soybean	nucleus	79.33	80.41
KRH29832	Soybean	nucleus	79.33	80.41
KRH29831	Soybean	nucleus	79.33	80.41
Solyc06g074790.1.1	Tomato	nucleus	76.0	80.28
Bra002436.1-P	Field mustard	nucleus	75.33	80.14
KRH24831	Soybean	nucleus	79.33	79.87
KRH24833	Soybean	nucleus	79.33	79.87
PGSC0003DMT400022099	Potato	nucleus	76.67	79.86
PGSC0003DMT400022074	Potato	nucleus	76.67	79.86
PGSC0003DMT400060096	Potato	nucleus	78.0	79.59
AT5G22880.1	Thale cress	nucleus	76.67	79.31
KRH24830	Soybean	nucleus	78.67	79.19
Solyc12g013510.1.1	Tomato	nucleus	73.33	79.14
AT1G07790.1	Thale cress	nucleus	78.0	79.05
Solyc05g055440.1.1	Tomato	nucleus	77.33	78.91
PGSC0003DMT400001108	Potato	nucleus	74.67	78.87
PGSC0003DMT400018456	Potato	nucleus	74.67	78.87
Bra006639.1-P	Field mustard	nucleus	75.33	78.47
Solyc02g038690.1.1	Tomato	nucleus	70.0	78.36
PGSC0003DMT400018455	Potato	nucleus	74.67	78.32
VIT_06s0004g04300.t01	Wine grape	nucleus	79.33	78.29
Bra000483.1-P	Field mustard	nucleus	80.67	78.06
Solyc06g074780.1.1	Tomato	nucleus	74.0	77.62
GSMUA_Achr7P15260_001	Banana	nucleus	77.33	76.32
PGSC0003DMT400074020	Potato	nucleus	64.0	71.11
CDX71015	Canola	nucleus	29.33	66.67
Os08t0490900-00	Rice	nucleus	90.0	63.68
Solyc10g044580.1.1	Tomato	nucleus	55.33	61.48
Zm00001d048491_P001	Maize	plastid	94.67	59.66
TraesCS6B01G081700.1	Wheat	nucleus	59.33	54.27
VIT_06s0004g04240.t01	Wine grape	nucleus	81.33	53.04
GSMUA_Achr6P33320_001	Banana	nucleus	70.0	50.72
TraesCS6D01G063200.1	Wheat	nucleus	64.0	48.48
TraesCS6A01G061400.1	Wheat	nucleus	65.33	46.89
Zm00001d005322_P001	Maize	nucleus	41.33	23.66
PGSC0003DMT400074018	Potato	nucleus	56.0	22.05

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100193014	MapMan:12.1.3	ProteinID:AQK51912.1	UniProt:B4FDH5	EMBL:BT035163
EMBL:EU953348	EMBL:EU958886	EMBL:EU959103	EMBL:EU962549	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2B	InterPro:IPR009072	UniProt:P30756	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357
PANTHER:PTHR23428	PANTHER:PTHR23428:SF175	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000012BF97	EMBL:X57313
EnsemblPlantsGene:Zm00001d050100	EnsemblPlants:Zm00001d050100_P001	EnsemblPlants:Zm00001d050100_T001	SEG:seg	:	:

Description

histone2b2Histone H2B.2

Coordinates

chr4:-:65618139..65618591

Molecular Weight (calculated)

16174.8 Da

IEP (calculated)

10.822

GRAVY (calculated)

-0.683

Length

150 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AKKPAEEEPA AEKAPAGKKP KAEKRVPAGK SAGKEGGEGK RGRKKGKKSV ETYKIYIFKV LKQVHPDIGI SSKAMSIMNS FINDIFEKLA
101: AEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.