Factsheet for Os01t0149600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 18022940
nucleus: 18203134
nucleus: 23777608

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0152900-00	Rice	nucleus	98.69	98.69
Os01t0152300-00	Rice	nucleus	98.69	98.69
Os01t0153300-00	Rice	nucleus	98.04	96.77
Os01t0153100-00	Rice	nucleus	96.08	96.08
Os05t0574300-00	Rice	nucleus	94.77	95.39
Zm00001d050100_P001	Maize	plastid	90.85	92.67
EES15092	Sorghum	nucleus	90.85	92.05
Zm00001d025913_P001	Maize	plastid	90.2	92.0
GSMUA_Achr9P04060_001	Banana	nucleus	69.93	91.45
Zm00001d032070_P001	Maize	plastid	89.54	91.33
Os05t0460475-00	Rice	nucleus	62.09	89.62
Os01t0839500-00	Rice	nucleus	80.39	88.49
Os03t0279000-00	Rice	nucleus	86.93	87.5
Bra007018.1-P	Field mustard	nucleus	78.43	86.96
Bra039810.1-P	Field mustard	nucleus	77.78	86.23
KRH26542	Soybean	nucleus	74.51	85.07
KRH22818	Soybean	nucleus	73.86	84.96
KRH67549	Soybean	nucleus	76.47	84.78
KRG95819	Soybean	nucleus	76.47	84.78
AT2G37470.1	Thale cress	nucleus	76.47	84.78
KRG92106	Soybean	nucleus	75.16	84.56
PGSC0003DMT400043578	Potato	nucleus	77.78	84.4
Solyc03g071620.1.1	Tomato	nucleus	77.78	84.4
PGSC0003DMT400077939	Potato	nucleus	80.39	84.25
Solyc06g075800.1.1	Tomato	nucleus	80.39	84.25
KRH19721	Soybean	nucleus	76.47	84.17
Bra003150.1-P	Field mustard	nucleus	75.82	84.06
PGSC0003DMT400070383	Potato	nucleus	77.78	83.8
Bra006685.1-P	Field mustard	nucleus	77.12	83.69
AT3G46030.1	Thale cress	nucleus	79.08	83.45
Bra002520.1-P	Field mustard	nucleus	81.7	83.33
Bra038267.1-P	Field mustard	nucleus	74.51	83.21
KRH34681	Soybean	nucleus	74.51	83.21
Solyc11g007930.1.1	Tomato	nucleus	74.51	82.61
AT3G53650.1	Thale cress	nucleus	74.51	82.61
AT5G02570.1	Thale cress	nucleus	71.24	82.58
GSMUA_Achr2P19080_001	Banana	nucleus	77.12	82.52
VIT_06s0004g04250.t01	Wine grape	nucleus	79.74	82.43
Solyc06g074790.1.1	Tomato	nucleus	76.47	82.39
Bra002436.1-P	Field mustard	nucleus	75.82	82.27
VIT_06s0004g04230.t01	Wine grape	nucleus	78.43	82.19
Solyc11g066430.1.1	Tomato	nucleus	75.16	82.14
AT5G59910.1	Thale cress	nucleus	80.39	82.0
AT3G45980.1	Thale cress	nucleus	80.39	82.0
PGSC0003DMT400070382	Potato	nucleus	77.12	81.94
KRH29833	Soybean	nucleus	76.47	81.82
KRH29832	Soybean	nucleus	79.08	81.76
KRH29836	Soybean	nucleus	79.08	81.76
KRH29831	Soybean	nucleus	79.08	81.76
Bra020275.1-P	Field mustard	nucleus	75.82	81.69
Solyc06g005390.1.1	Tomato	nucleus	78.43	81.63
PGSC0003DMT400074994	Potato	nucleus	78.43	81.63
VIT_13s0019g05370.t01	Wine grape	nucleus	77.12	81.38
PGSC0003DMT400022074	Potato	nucleus	76.47	81.25
PGSC0003DMT400022099	Potato	nucleus	76.47	81.25
KRH24833	Soybean	nucleus	79.08	81.21
KRH24831	Soybean	nucleus	79.08	81.21
PGSC0003DMT400018456	Potato	nucleus	75.16	80.99
AT3G09480.1	Thale cress	nucleus	66.67	80.95
PGSC0003DMT400060096	Potato	nucleus	77.78	80.95
AT2G28720.1	Thale cress	nucleus	79.74	80.79
AT5G22880.1	Thale cress	nucleus	76.47	80.69
Solyc12g013510.1.1	Tomato	nucleus	73.2	80.58
Bra006639.1-P	Field mustard	nucleus	75.82	80.56
Solyc11g007920.1.1	Tomato	nucleus	75.82	80.56
KRH24830	Soybean	nucleus	78.43	80.54
AT1G07790.1	Thale cress	nucleus	77.78	80.41
PGSC0003DMT400001108	Potato	nucleus	74.51	80.28
Solyc05g055440.1.1	Tomato	nucleus	77.12	80.27
Bra011930.1-P	Field mustard	nucleus	77.78	79.87
Bra035677.1-P	Field mustard	nucleus	77.78	79.87
Solyc02g038690.1.1	Tomato	nucleus	69.93	79.85
Solyc06g074780.1.1	Tomato	nucleus	73.86	79.02
PGSC0003DMT400018455	Potato	nucleus	73.86	79.02
VIT_06s0004g04300.t01	Wine grape	nucleus	77.78	78.29
Bra000483.1-P	Field mustard	nucleus	78.43	77.42
GSMUA_Achr7P15260_001	Banana	nucleus	76.47	76.97
PGSC0003DMT400074020	Potato	nucleus	63.4	71.85
CDX71015	Canola	nucleus	28.1	65.15
Os08t0490900-00	Rice	nucleus	89.54	64.62
Solyc10g044580.1.1	Tomato	nucleus	54.25	61.48
VIT_06s0004g04240.t01	Wine grape	nucleus	79.08	52.61
GSMUA_Achr6P33320_001	Banana	nucleus	67.32	49.76
Os09t0570850-00	Rice	nucleus	35.95	36.18
PGSC0003DMT400074018	Potato	nucleus	56.21	22.57

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:4324512	EMBL:AP014957	UniProt:B9A1G6	ProteinID:BAB44008.1
ProteinID:BAF03940.1	ProteinID:BAH20863.1	ProteinID:EAZ10547.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B
InterPro:IPR009072	EnsemblPlantsGene:Os01g0149600	EnsemblPlants:Os01t0149600-01	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357
PANTHER:PTHR23428	PANTHER:PTHR23428:SF72	UniProt:Q94JJ4	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI00000A856F
RefSeq:XP_015645087.1	SEG:seg	:	:	:	:

Description

PYRICULARIA ORYZAE RESISTANCE THiston H2B (Os01t0149600-01)

Coordinates

chr1:+:2686729..2687456

Molecular Weight (calculated)

16503.2 Da

IEP (calculated)

10.768

GRAVY (calculated)

-0.691

Length

153 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AKKPAEEEPA AEKAEKAPAG KKPKAEKRLP AGKAEKGSGE GKKAGRKKAK KSVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAGESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSA

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.