Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074994 | Potato | nucleus | 100.0 | 100.0 |
| GSMUA_Achr8P20900_001 | Banana | nucleus | 42.18 | 93.94 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 60.54 | 92.71 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 60.54 | 92.71 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 41.5 | 92.42 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 59.86 | 91.67 |
| GSMUA_Achr10P... | Banana | nucleus | 40.82 | 90.91 |
| Solyc03g071620.1.1 | Tomato | nucleus | 87.07 | 90.78 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 71.43 | 89.74 |
| Solyc06g075800.1.1 | Tomato | nucleus | 89.12 | 89.73 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 59.18 | 89.69 |
| KRH29833 | Soybean | nucleus | 87.07 | 89.51 |
| KRH29831 | Soybean | nucleus | 89.8 | 89.19 |
| KRH29832 | Soybean | nucleus | 89.8 | 89.19 |
| KRH29836 | Soybean | nucleus | 89.8 | 89.19 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 71.43 | 88.98 |
| Solyc02g038690.1.1 | Tomato | nucleus | 80.95 | 88.81 |
| KRH24831 | Soybean | nucleus | 89.8 | 88.59 |
| KRH24833 | Soybean | nucleus | 89.8 | 88.59 |
| Solyc11g066430.1.1 | Tomato | nucleus | 84.35 | 88.57 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 89.12 | 88.51 |
| KRH24830 | Soybean | nucleus | 89.12 | 87.92 |
| Os05t0460475-00 | Rice | nucleus | 63.27 | 87.74 |
| Solyc11g007930.1.1 | Tomato | nucleus | 82.31 | 87.68 |
| Solyc11g007920.1.1 | Tomato | nucleus | 85.71 | 87.5 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 80.95 | 87.5 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 80.95 | 87.5 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 80.95 | 87.5 |
| Solyc05g055440.1.1 | Tomato | nucleus | 87.07 | 87.07 |
| Solyc12g013510.1.1 | Tomato | nucleus | 82.31 | 87.05 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 86.39 | 86.99 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 80.27 | 86.76 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 79.59 | 86.67 |
| Solyc06g074790.1.1 | Tomato | nucleus | 83.67 | 86.62 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 56.46 | 86.46 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 80.95 | 86.23 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 79.59 | 86.03 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 78.91 | 85.93 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 78.91 | 85.93 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 78.91 | 85.93 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 78.91 | 85.93 |
| TraesCSU01G077200.1 | Wheat | nucleus | 78.91 | 85.93 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 78.23 | 85.19 |
| TraesCSU01G077400.1 | Wheat | nucleus | 78.23 | 85.19 |
| Os01t0839500-00 | Rice | nucleus | 80.27 | 84.89 |
| EES03855 | Sorghum | nucleus | 78.91 | 84.67 |
| Zm00001d012423_P001 | Maize | plastid | 78.91 | 84.67 |
| Solyc06g074780.1.1 | Tomato | nucleus | 82.31 | 84.62 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 78.23 | 84.56 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 78.23 | 84.56 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 78.23 | 84.56 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 77.55 | 84.44 |
| Zm00001d042930_P001 | Maize | plastid | 78.23 | 83.94 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 81.63 | 83.92 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 77.55 | 83.82 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 84.35 | 83.78 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 86.39 | 83.55 |
| OQU92807 | Sorghum | nucleus | 82.99 | 82.43 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 79.59 | 82.39 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 78.23 | 82.14 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 68.71 | 82.11 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 76.87 | 81.88 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 76.87 | 81.88 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 76.87 | 81.88 |
| EES00304 | Sorghum | nucleus | 82.99 | 81.88 |
| Zm00001d039821_P001 | Maize | plastid | 82.99 | 81.88 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 78.91 | 81.69 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 78.91 | 81.69 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 78.91 | 81.69 |
| EES18353 | Sorghum | nucleus | 81.63 | 81.63 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 77.55 | 81.43 |
| EES00399 | Sorghum | nucleus | 82.99 | 81.33 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 76.87 | 81.3 |
| EES00305 | Sorghum | nucleus | 82.31 | 81.21 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 76.19 | 81.16 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 76.19 | 81.16 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 76.19 | 81.16 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 76.19 | 81.16 |
| Zm00001d044247_P001 | Maize | plastid | 81.63 | 81.08 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 78.23 | 80.99 |
| EES15460 | Sorghum | nucleus | 83.67 | 80.92 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 77.55 | 80.85 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 76.19 | 80.58 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 75.51 | 80.43 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 75.51 | 80.43 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 75.51 | 80.43 |
| TraesCSU01G169300.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169400.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169500.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169700.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169800.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169900.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170400.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170500.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170600.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170700.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170900.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G171000.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G171100.1 | Wheat | nucleus | 80.95 | 80.41 |
| EER96770 | Sorghum | nucleus | 83.67 | 80.39 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 82.99 | 80.26 |
| Zm00001d020580_P001 | Maize | plastid | 82.31 | 80.13 |
| Zm00001d011236_P001 | Maize | plastid | 81.63 | 80.0 |
| Os03t0279000-00 | Rice | nucleus | 82.31 | 79.61 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 82.31 | 79.61 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 82.31 | 79.61 |
| Zm00001d005789_P001 | Maize | plastid | 82.31 | 79.61 |
| Zm00001d007084_P001 | Maize | plastid | 82.31 | 79.61 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 81.63 | 79.47 |
| Zm00001d050100_P001 | Maize | plastid | 80.95 | 79.33 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 80.27 | 79.19 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 82.31 | 79.08 |
| Os01t0153100-00 | Rice | nucleus | 82.31 | 79.08 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 82.31 | 79.08 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 81.63 | 78.95 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 81.63 | 78.95 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 81.63 | 78.95 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 81.63 | 78.95 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 81.63 | 78.95 |
| EES15092 | Sorghum | nucleus | 80.95 | 78.81 |
| EES07386 | Sorghum | nucleus | 82.99 | 78.71 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 80.27 | 78.67 |
| Zm00001d025913_P001 | Maize | plastid | 80.27 | 78.67 |
| Zm00001d032070_P001 | Maize | plastid | 80.27 | 78.67 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 82.31 | 78.57 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 79.59 | 78.52 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 76.87 | 78.47 |
| OQU87075 | Sorghum | nucleus | 81.63 | 78.43 |
| Os01t0149600-01 | Rice | nucleus | 81.63 | 78.43 |
| Os01t0152900-00 | Rice | nucleus | 81.63 | 78.43 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 74.15 | 78.42 |
| Os05t0574300-00 | Rice | nucleus | 80.95 | 78.29 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 80.95 | 78.29 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 80.95 | 78.29 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 80.95 | 78.29 |
| TraesCS6B01G048500.1 | Wheat | unclear | 76.87 | 77.93 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 81.63 | 77.92 |
| Zm00001d051591_P001 | Maize | plastid | 81.63 | 77.92 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 70.75 | 77.61 |
| EER97675 | Sorghum | nucleus | 79.59 | 77.48 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 53.74 | 77.45 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 78.91 | 77.33 |
| Os01t0152300-00 | Rice | nucleus | 80.27 | 77.12 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 75.51 | 77.08 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 82.31 | 77.07 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 78.91 | 76.82 |
| Os01t0153300-00 | Rice | nucleus | 80.95 | 76.77 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 75.51 | 76.55 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 79.59 | 76.47 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 78.91 | 76.32 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 80.95 | 76.28 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 82.31 | 76.1 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 82.31 | 76.1 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 74.83 | 75.86 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 78.91 | 75.82 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 79.59 | 75.48 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 60.54 | 75.42 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 77.55 | 75.0 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 78.23 | 74.68 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 79.59 | 74.52 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 77.55 | 74.51 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 77.55 | 74.51 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 76.87 | 73.38 |
| TraesCSU01G081100.1 | Wheat | nucleus | 76.19 | 72.73 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 78.23 | 72.33 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 58.5 | 72.27 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 76.87 | 71.97 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 78.91 | 71.17 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 78.91 | 70.73 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 84.35 | 70.45 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 63.27 | 70.45 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 78.91 | 69.88 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 76.19 | 68.71 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 80.27 | 68.6 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 76.19 | 68.29 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 78.23 | 67.65 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 81.63 | 66.3 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 82.31 | 66.12 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 82.31 | 66.12 |
| Solyc10g044580.1.1 | Tomato | nucleus | 60.54 | 65.93 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 52.38 | 65.81 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 76.19 | 64.74 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 78.91 | 64.44 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 78.91 | 64.44 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 78.23 | 64.25 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 72.11 | 61.99 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 82.31 | 57.89 |
| Os08t0490900-00 | Rice | nucleus | 82.31 | 57.08 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 81.63 | 56.87 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 81.63 | 56.6 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 87.76 | 56.09 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 68.03 | 54.35 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 74.83 | 52.38 |
| Zm00001d048491_P001 | Maize | plastid | 82.99 | 51.26 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 83.67 | 50.62 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 70.07 | 49.76 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 52.38 | 46.95 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 54.42 | 40.4 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 53.74 | 37.8 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 48.98 | 25.44 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| UniProt:K4C323 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF106 |
| SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc06g005390.1 | EnsemblPlants:Solyc06g005390.1.1 | UniParc:UPI0002765B33 | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4C323]
Coordinates
chr6:+:401311..401754
Molecular Weight (calculated)
16094.7 Da
IEP (calculated)
10.716
GRAVY (calculated)
-0.714
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKNPASEKPS DDKAPAEKKP KAGKKLPTKD VGVGIGEKKK KKVKKSSETY KIYIFKVLKQ VHPDIGISSK AMGIMNSFIN DIFEKLAQES
101: SKLARYNKKP TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSS
101: SKLARYNKKP TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.