Factsheet for TraesCS7A01G491100.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, unclear
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 19786127
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G110290.1	Barley	nucleus	71.83	100.0
TraesCS7B01G394900.1	Wheat	nucleus	100.0	100.0
TraesCS7D01G477300.1	Wheat	nucleus	100.0	100.0
TraesCS7D01G477400.1	Wheat	nucleus	99.3	99.3
TraesCS3A01G075800.1	Wheat	nucleus	64.08	94.79
TraesCS6A01G086400.1	Wheat	nucleus	89.44	94.07
TraesCS2A01G312400.1	Wheat	nucleus	78.17	94.07
TraesCS7A01G490900.1	Wheat	nucleus	90.85	93.48
TraesCS7A01G491000.1	Wheat	nucleus	90.85	93.48
TraesCS6A01G040500.1	Wheat	nucleus	89.44	93.38
TraesCS6A01G086200.1	Wheat	nucleus	88.73	93.33
TraesCS6A01G040200.1	Wheat	nucleus	90.14	92.75
TraesCS6A01G040400.1	Wheat	nucleus	88.03	89.93
TraesCS3A01G357500.1	Wheat	nucleus	85.92	89.71
GSMUA_Achr9P04060_001	Banana	nucleus	73.24	88.89
TraesCS3A01G357400.1	Wheat	nucleus	85.92	88.41
TraesCS6A01G035000.1	Wheat	nucleus	89.44	88.19
EES00304	Sorghum	nucleus	92.25	87.92
TraesCS6A01G034500.1	Wheat	nucleus	88.73	87.5
EES00305	Sorghum	nucleus	91.55	87.25
Zm00001d039821_P001	Maize	plastid	91.55	87.25
TraesCS4A01G260400.1	Wheat	nucleus	92.96	86.84
TraesCS3A01G102500.1	Wheat	nucleus	88.03	86.81
EES00399	Sorghum	nucleus	91.55	86.67
TraesCS4A01G030500.1	Wheat	nucleus	85.21	85.82
TraesCS1A01G190400.1	Wheat	nucleus	84.51	85.71
TraesCS5A01G384300.1	Wheat	nucleus	90.85	84.87
Bra007018.1-P	Field mustard	nucleus	82.39	84.78
Bra039810.1-P	Field mustard	nucleus	82.39	84.78
TraesCS3A01G088800.1	Wheat	nucleus	90.14	84.77
TraesCS4A01G099900.1	Wheat	nucleus	88.73	84.56
EES15460	Sorghum	nucleus	90.14	84.21
KRH22818	Soybean	nucleus	78.87	84.21
TraesCS4A01G030400.1	Wheat	nucleus	90.85	83.77
KRH26542	Soybean	nucleus	78.87	83.58
KRG95819	Soybean	nucleus	80.99	83.33
KRH67549	Soybean	nucleus	80.99	83.33
Bra038267.1-P	Field mustard	nucleus	80.28	83.21
Solyc03g071620.1.1	Tomato	nucleus	82.39	82.98
KRH19721	Soybean	nucleus	80.99	82.73
KRG92106	Soybean	nucleus	78.87	82.35
Bra006685.1-P	Field mustard	nucleus	81.69	82.27
PGSC0003DMT400043578	Potato	nucleus	81.69	82.27
AT3G46030.1	Thale cress	nucleus	83.8	82.07
AT5G22880.1	Thale cress	nucleus	83.8	82.07
Bra003150.1-P	Field mustard	nucleus	79.58	81.88
AT5G02570.1	Thale cress	nucleus	76.06	81.82
TraesCS1A01G361600.1	Wheat	nucleus	88.03	81.7
TraesCS1A01G367900.1	Wheat	nucleus	88.03	81.7
TraesCS1A01G368000.1	Wheat	nucleus	88.03	81.7
TraesCS1A01G228700.1	Wheat	nucleus	87.32	81.58
Bra002436.1-P	Field mustard	nucleus	80.99	81.56
Solyc11g066430.1.1	Tomato	nucleus	80.28	81.43
AT2G37470.1	Thale cress	nucleus	78.87	81.16
GSMUA_Achr2P19080_001	Banana	nucleus	81.69	81.12
TraesCS1A01G388600.1	Wheat	nucleus	87.32	81.05
KRH34681	Soybean	nucleus	78.17	81.02
Bra020275.1-P	Field mustard	nucleus	80.99	80.99
PGSC0003DMT400070383	Potato	nucleus	80.99	80.99
AT3G09480.1	Thale cress	nucleus	71.83	80.95
PGSC0003DMT400077939	Potato	nucleus	83.1	80.82
Solyc06g075800.1.1	Tomato	nucleus	83.1	80.82
Bra002520.1-P	Field mustard	nucleus	85.21	80.67
AT3G53650.1	Thale cress	nucleus	78.17	80.43
Solyc11g007930.1.1	Tomato	nucleus	78.17	80.43
KRH29833	Soybean	nucleus	80.99	80.42
VIT_06s0004g04250.t01	Wine grape	nucleus	83.8	80.41
Solyc06g074790.1.1	Tomato	nucleus	80.28	80.28
VIT_06s0004g04230.t01	Wine grape	nucleus	82.39	80.14
PGSC0003DMT400001108	Potato	nucleus	79.58	79.58
AT3G45980.1	Thale cress	nucleus	83.8	79.33
AT5G59910.1	Thale cress	nucleus	83.8	79.33
Bra006639.1-P	Field mustard	nucleus	80.28	79.17
PGSC0003DMT400070382	Potato	nucleus	80.28	79.17
Solyc02g038690.1.1	Tomato	nucleus	74.65	79.1
AT1G07790.1	Thale cress	nucleus	82.39	79.05
PGSC0003DMT400060096	Potato	nucleus	81.69	78.91
PGSC0003DMT400074994	Potato	nucleus	81.69	78.91
Solyc06g005390.1.1	Tomato	nucleus	81.69	78.91
PGSC0003DMT400018456	Potato	nucleus	78.87	78.87
TraesCS5A01G051900.1	Wheat	nucleus	86.62	78.85
VIT_13s0019g05370.t01	Wine grape	nucleus	80.28	78.62
PGSC0003DMT400022099	Potato	nucleus	79.58	78.47
KRH29831	Soybean	nucleus	81.69	78.38
KRH29832	Soybean	nucleus	81.69	78.38
KRH29836	Soybean	nucleus	81.69	78.38
Solyc05g055440.1.1	Tomato	nucleus	80.99	78.23
Bra035677.1-P	Field mustard	nucleus	81.69	77.85
KRH24831	Soybean	nucleus	81.69	77.85
KRH24833	Soybean	nucleus	81.69	77.85
PGSC0003DMT400022074	Potato	nucleus	78.87	77.78
Solyc11g007920.1.1	Tomato	nucleus	78.87	77.78
Solyc12g013510.1.1	Tomato	nucleus	76.06	77.7
Bra011930.1-P	Field mustard	nucleus	80.99	77.18
KRH24830	Soybean	nucleus	80.99	77.18
AT2G28720.1	Thale cress	nucleus	81.69	76.82
VIT_06s0004g04300.t01	Wine grape	nucleus	81.69	76.32
PGSC0003DMT400018455	Potato	nucleus	76.76	76.22
Solyc06g074780.1.1	Tomato	nucleus	76.76	76.22
GSMUA_Achr7P15260_001	Banana	nucleus	79.58	74.34
Bra000483.1-P	Field mustard	nucleus	80.99	74.19
PGSC0003DMT400074020	Potato	nucleus	66.2	69.63
CDX71015	Canola	nucleus	30.99	66.67
Solyc10g044580.1.1	Tomato	nucleus	59.15	62.22
TraesCS4A01G311600.1	Wheat	mitochondrion	35.92	57.3
Zm00001d048491_P001	Maize	plastid	91.55	54.62
VIT_06s0004g04240.t01	Wine grape	nucleus	82.39	50.87
GSMUA_Achr6P33320_001	Banana	nucleus	70.42	48.31
TraesCS6A01G061400.1	Wheat	nucleus	62.68	42.58
PGSC0003DMT400074018	Potato	nucleus	57.75	21.52

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621
ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF62	SMART:SM00427	SUPFAM:SSF47113	EnsemblPlantsGene:TraesCS7A01G491100
EnsemblPlants:TraesCS7A01G491100.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:680325315..680325743

Molecular Weight (calculated)

15471.0 Da

IEP (calculated)

10.852

GRAVY (calculated)

-0.702

Length

142 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AAEKTPAAEK TTAGKKPKAE KRPPKSKEGG ADKKKKKAKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK LAGESAKLAR
101: YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.