Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G367900.1 | Wheat | nucleus | 99.35 | 99.35 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 99.35 | 99.35 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 99.35 | 99.35 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 99.35 | 99.35 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 98.69 | 98.69 |
| TraesCSU01G081100.1 | Wheat | nucleus | 96.73 | 96.1 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 59.48 | 94.79 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 72.55 | 94.07 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 88.24 | 93.75 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 88.24 | 93.75 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 84.97 | 93.53 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 86.93 | 92.36 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 84.97 | 92.2 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 84.31 | 92.14 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 81.05 | 91.18 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 80.39 | 91.11 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 79.74 | 90.37 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 81.05 | 89.86 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 81.05 | 89.86 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 80.39 | 89.13 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 67.97 | 88.89 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 81.7 | 88.03 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 89.54 | 87.82 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 88.24 | 87.66 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 86.93 | 87.5 |
| Zm00001d007084_P001 | Maize | plastid | 86.93 | 87.5 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 86.27 | 86.84 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 84.31 | 86.58 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 84.97 | 86.09 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 76.47 | 86.03 |
| Zm00001d051591_P001 | Maize | plastid | 86.27 | 85.71 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 76.47 | 84.78 |
| KRH26542 | Soybean | nucleus | 72.55 | 82.84 |
| KRH22818 | Soybean | nucleus | 71.9 | 82.71 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 81.7 | 82.24 |
| KRG95819 | Soybean | nucleus | 73.86 | 81.88 |
| KRH67549 | Soybean | nucleus | 73.86 | 81.88 |
| Bra038267.1-P | Field mustard | nucleus | 73.2 | 81.75 |
| PGSC0003DMT400077939 | Potato | nucleus | 77.78 | 81.51 |
| Solyc06g075800.1.1 | Tomato | nucleus | 77.78 | 81.51 |
| AT2G37470.1 | Thale cress | nucleus | 73.2 | 81.16 |
| Bra007018.1-P | Field mustard | nucleus | 73.2 | 81.16 |
| Bra039810.1-P | Field mustard | nucleus | 73.2 | 81.16 |
| KRH29833 | Soybean | nucleus | 75.82 | 81.12 |
| KRH34681 | Soybean | nucleus | 72.55 | 81.02 |
| AT3G46030.1 | Thale cress | nucleus | 76.47 | 80.69 |
| KRH19721 | Soybean | nucleus | 73.2 | 80.58 |
| KRG92106 | Soybean | nucleus | 71.24 | 80.15 |
| PGSC0003DMT400043578 | Potato | nucleus | 73.86 | 80.14 |
| Solyc03g071620.1.1 | Tomato | nucleus | 73.86 | 80.14 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 74.51 | 79.72 |
| AT3G53650.1 | Thale cress | nucleus | 71.9 | 79.71 |
| Bra003150.1-P | Field mustard | nucleus | 71.9 | 79.71 |
| Bra020275.1-P | Field mustard | nucleus | 73.86 | 79.58 |
| Solyc06g074790.1.1 | Tomato | nucleus | 73.86 | 79.58 |
| AT5G02570.1 | Thale cress | nucleus | 68.63 | 79.55 |
| Bra006685.1-P | Field mustard | nucleus | 73.2 | 79.43 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 75.16 | 79.31 |
| PGSC0003DMT400018456 | Potato | nucleus | 73.2 | 78.87 |
| PGSC0003DMT400070383 | Potato | nucleus | 73.2 | 78.87 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 75.16 | 78.77 |
| Bra002436.1-P | Field mustard | nucleus | 72.55 | 78.72 |
| Bra002520.1-P | Field mustard | nucleus | 77.12 | 78.67 |
| AT5G22880.1 | Thale cress | nucleus | 74.51 | 78.62 |
| PGSC0003DMT400070382 | Potato | nucleus | 73.86 | 78.47 |
| KRH29831 | Soybean | nucleus | 75.82 | 78.38 |
| KRH29832 | Soybean | nucleus | 75.82 | 78.38 |
| KRH29836 | Soybean | nucleus | 75.82 | 78.38 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 75.82 | 78.38 |
| Solyc11g007930.1.1 | Tomato | nucleus | 70.59 | 78.26 |
| PGSC0003DMT400060096 | Potato | nucleus | 75.16 | 78.23 |
| PGSC0003DMT400074994 | Potato | nucleus | 75.16 | 78.23 |
| Solyc05g055440.1.1 | Tomato | nucleus | 75.16 | 78.23 |
| Solyc06g005390.1.1 | Tomato | nucleus | 75.16 | 78.23 |
| Solyc11g066430.1.1 | Tomato | nucleus | 71.24 | 77.86 |
| KRH24830 | Soybean | nucleus | 75.82 | 77.85 |
| KRH24831 | Soybean | nucleus | 75.82 | 77.85 |
| KRH24833 | Soybean | nucleus | 75.82 | 77.85 |
| AT3G09480.1 | Thale cress | nucleus | 64.05 | 77.78 |
| Bra006639.1-P | Field mustard | nucleus | 73.2 | 77.78 |
| Solyc11g007920.1.1 | Tomato | nucleus | 73.2 | 77.78 |
| AT1G07790.1 | Thale cress | nucleus | 75.16 | 77.7 |
| Solyc02g038690.1.1 | Tomato | nucleus | 67.97 | 77.61 |
| AT2G28720.1 | Thale cress | nucleus | 76.47 | 77.48 |
| AT3G45980.1 | Thale cress | nucleus | 75.82 | 77.33 |
| AT5G59910.1 | Thale cress | nucleus | 75.82 | 77.33 |
| PGSC0003DMT400001108 | Potato | nucleus | 71.24 | 76.76 |
| Bra035677.1-P | Field mustard | nucleus | 74.51 | 76.51 |
| PGSC0003DMT400022074 | Potato | nucleus | 71.9 | 76.39 |
| PGSC0003DMT400022099 | Potato | nucleus | 71.9 | 76.39 |
| Solyc12g013510.1.1 | Tomato | nucleus | 69.28 | 76.26 |
| PGSC0003DMT400018455 | Potato | nucleus | 71.24 | 76.22 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 88.89 | 75.98 |
| Bra011930.1-P | Field mustard | nucleus | 73.86 | 75.84 |
| Solyc06g074780.1.1 | Tomato | nucleus | 70.59 | 75.52 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 74.51 | 75.0 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 74.51 | 75.0 |
| Bra000483.1-P | Field mustard | nucleus | 74.51 | 73.55 |
| PGSC0003DMT400074020 | Potato | nucleus | 61.44 | 69.63 |
| CDX71015 | Canola | nucleus | 28.1 | 65.15 |
| Solyc10g044580.1.1 | Tomato | nucleus | 52.29 | 59.26 |
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 33.33 | 57.3 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 75.16 | 50.0 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 65.36 | 48.31 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 56.86 | 41.63 |
| PGSC0003DMT400074018 | Potato | nucleus | 54.25 | 21.78 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS1A01G361600 |
| EnsemblPlants:TraesCS1A01G361600.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:542167994..542168455
Molecular Weight (calculated)
16471.1 Da
IEP (calculated)
10.906
GRAVY (calculated)
-0.677
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKADKKPA AESKVEKAAE KTPAGKKPKA EKRLPAGKTA SKEAGGEGKT RGRKKGSKAK KGVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAGESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSS
101: KLAGESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.