Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039821_P001 | Maize | plastid | 94.74 | 96.64 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 75.0 | 96.61 |
| Zm00001d050100_P001 | Maize | plastid | 94.74 | 96.0 |
| Zm00001d051591_P001 | Maize | plastid | 96.05 | 94.81 |
| Zm00001d032070_P001 | Maize | plastid | 93.42 | 94.67 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 86.84 | 94.29 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 94.08 | 94.08 |
| Zm00001d011236_P001 | Maize | plastid | 92.76 | 94.0 |
| Zm00001d025913_P001 | Maize | plastid | 92.76 | 94.0 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 86.84 | 93.62 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 94.74 | 93.51 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 94.74 | 93.51 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 94.08 | 93.46 |
| Zm00001d005789_P001 | Maize | plastid | 93.42 | 93.42 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 71.71 | 93.16 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 93.42 | 92.81 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 92.76 | 92.76 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 92.76 | 92.76 |
| Zm00001d020580_P001 | Maize | plastid | 92.11 | 92.72 |
| Zm00001d012423_P001 | Maize | plastid | 83.55 | 92.7 |
| TraesCSU01G169300.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G169400.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G169500.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G169700.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G169800.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G169900.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G170400.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G170500.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G170600.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G170700.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G170900.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G171000.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCSU01G171100.1 | Wheat | nucleus | 90.13 | 92.57 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 92.11 | 92.11 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 92.11 | 92.11 |
| Zm00001d042930_P001 | Maize | plastid | 82.89 | 91.97 |
| Zm00001d044247_P001 | Maize | plastid | 89.47 | 91.89 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 92.11 | 91.5 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 94.08 | 89.94 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 93.42 | 89.31 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 91.45 | 89.1 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 88.16 | 88.74 |
| TraesCS6B01G048500.1 | Wheat | unclear | 83.55 | 87.59 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 88.16 | 87.58 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 82.89 | 87.5 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 86.18 | 87.33 |
| Bra007018.1-P | Field mustard | nucleus | 78.95 | 86.96 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 87.5 | 86.93 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 86.84 | 86.84 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 82.24 | 86.81 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 82.24 | 86.81 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 82.24 | 86.81 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 82.24 | 86.81 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 82.24 | 86.81 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 82.24 | 86.81 |
| KRH26542 | Soybean | nucleus | 76.32 | 86.57 |
| KRH22818 | Soybean | nucleus | 75.66 | 86.47 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 86.84 | 86.27 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 86.84 | 86.27 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 86.84 | 86.27 |
| Bra039810.1-P | Field mustard | nucleus | 78.29 | 86.23 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 81.58 | 86.11 |
| KRH19721 | Soybean | nucleus | 78.29 | 85.61 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 81.58 | 85.52 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 81.58 | 85.52 |
| Bra038267.1-P | Field mustard | nucleus | 76.97 | 85.4 |
| PGSC0003DMT400043578 | Potato | nucleus | 78.95 | 85.11 |
| Solyc03g071620.1.1 | Tomato | nucleus | 78.95 | 85.11 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 86.18 | 85.06 |
| PGSC0003DMT400077939 | Potato | nucleus | 81.58 | 84.93 |
| Solyc06g075800.1.1 | Tomato | nucleus | 81.58 | 84.93 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 81.58 | 84.93 |
| AT3G46030.1 | Thale cress | nucleus | 80.92 | 84.83 |
| AT2G37470.1 | Thale cress | nucleus | 76.97 | 84.78 |
| KRG95819 | Soybean | nucleus | 76.97 | 84.78 |
| KRH67549 | Soybean | nucleus | 76.97 | 84.78 |
| AT5G59910.1 | Thale cress | nucleus | 83.55 | 84.67 |
| Bra002520.1-P | Field mustard | nucleus | 83.55 | 84.67 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 79.61 | 84.62 |
| Bra020275.1-P | Field mustard | nucleus | 78.95 | 84.51 |
| TraesCSU01G081100.1 | Wheat | nucleus | 85.53 | 84.42 |
| Bra006685.1-P | Field mustard | nucleus | 78.29 | 84.4 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 80.26 | 84.14 |
| PGSC0003DMT400070382 | Potato | nucleus | 79.61 | 84.03 |
| KRH34681 | Soybean | nucleus | 75.66 | 83.94 |
| KRG92106 | Soybean | nucleus | 75.0 | 83.82 |
| PGSC0003DMT400070383 | Potato | nucleus | 78.29 | 83.8 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 81.58 | 83.78 |
| AT2G28720.1 | Thale cress | nucleus | 82.89 | 83.44 |
| AT3G45980.1 | Thale cress | nucleus | 82.24 | 83.33 |
| Bra003150.1-P | Field mustard | nucleus | 75.66 | 83.33 |
| Bra002436.1-P | Field mustard | nucleus | 76.97 | 82.98 |
| Solyc11g066430.1.1 | Tomato | nucleus | 76.32 | 82.86 |
| Solyc11g007920.1.1 | Tomato | nucleus | 78.29 | 82.64 |
| AT3G53650.1 | Thale cress | nucleus | 75.0 | 82.61 |
| Solyc11g007930.1.1 | Tomato | nucleus | 75.0 | 82.61 |
| AT5G02570.1 | Thale cress | nucleus | 71.71 | 82.58 |
| Bra011930.1-P | Field mustard | nucleus | 80.92 | 82.55 |
| Bra035677.1-P | Field mustard | nucleus | 80.92 | 82.55 |
| Solyc06g074790.1.1 | Tomato | nucleus | 76.97 | 82.39 |
| PGSC0003DMT400074994 | Potato | nucleus | 79.61 | 82.31 |
| Solyc06g005390.1.1 | Tomato | nucleus | 79.61 | 82.31 |
| AT5G22880.1 | Thale cress | nucleus | 78.29 | 82.07 |
| Solyc12g013510.1.1 | Tomato | nucleus | 75.0 | 82.01 |
| PGSC0003DMT400022099 | Potato | nucleus | 77.63 | 81.94 |
| KRH29833 | Soybean | nucleus | 76.97 | 81.82 |
| KRH29831 | Soybean | nucleus | 79.61 | 81.76 |
| KRH29832 | Soybean | nucleus | 79.61 | 81.76 |
| KRH29836 | Soybean | nucleus | 79.61 | 81.76 |
| PGSC0003DMT400060096 | Potato | nucleus | 78.95 | 81.63 |
| Bra006639.1-P | Field mustard | nucleus | 76.97 | 81.25 |
| PGSC0003DMT400022074 | Potato | nucleus | 76.97 | 81.25 |
| KRH24831 | Soybean | nucleus | 79.61 | 81.21 |
| KRH24833 | Soybean | nucleus | 79.61 | 81.21 |
| PGSC0003DMT400018455 | Potato | nucleus | 76.32 | 81.12 |
| Solyc06g074780.1.1 | Tomato | nucleus | 76.32 | 81.12 |
| AT1G07790.1 | Thale cress | nucleus | 78.95 | 81.08 |
| PGSC0003DMT400001108 | Potato | nucleus | 75.66 | 80.99 |
| PGSC0003DMT400018456 | Potato | nucleus | 75.66 | 80.99 |
| AT3G09480.1 | Thale cress | nucleus | 67.11 | 80.95 |
| Solyc05g055440.1.1 | Tomato | nucleus | 78.29 | 80.95 |
| Solyc02g038690.1.1 | Tomato | nucleus | 71.05 | 80.6 |
| KRH24830 | Soybean | nucleus | 78.95 | 80.54 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 80.26 | 80.26 |
| Bra000483.1-P | Field mustard | nucleus | 81.58 | 80.0 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 94.74 | 78.69 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 93.42 | 78.45 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 77.63 | 77.63 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 93.42 | 77.6 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 88.16 | 74.44 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 88.16 | 74.44 |
| PGSC0003DMT400074020 | Potato | nucleus | 65.13 | 73.33 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 85.53 | 72.63 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 92.76 | 67.46 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 92.76 | 66.82 |
| CDX71015 | Canola | nucleus | 28.95 | 66.67 |
| Solyc10g044580.1.1 | Tomato | nucleus | 55.92 | 62.96 |
| Zm00001d048491_P001 | Maize | plastid | 94.74 | 60.5 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 92.76 | 58.02 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 82.24 | 54.35 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 69.08 | 50.72 |
| Zm00001d005322_P001 | Maize | nucleus | 40.79 | 23.66 |
| PGSC0003DMT400074018 | Potato | nucleus | 57.24 | 22.83 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:103647911 | MapMan:12.1.3 | UniProt:A0A1D6F342 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2B | InterPro:IPR009072 | ProteinID:ONM25830.1 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI0001BA70DC | EnsemblPlantsGene:Zm00001d007084 |
| EnsemblPlants:Zm00001d007084_P001 | EnsemblPlants:Zm00001d007084_T001 | SEG:seg | : | : | : |
Description
Histone H2B
Coordinates
chr2:+:221914642..221915449
Molecular Weight (calculated)
16357.0 Da
IEP (calculated)
10.795
GRAVY (calculated)
-0.641
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA APAEKAPAGK KPKAEKRLPA GKSAGKEGGV DKKGRKKAKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK
101: LAGEAAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
101: LAGEAAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.