Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 nucleus: 26579155 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G275400.1 | Wheat | nucleus | 99.35 | 98.7 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 97.39 | 98.03 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 97.39 | 98.03 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 98.04 | 97.4 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 89.54 | 97.16 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 96.73 | 96.73 |
| EER97675 | Sorghum | nucleus | 94.12 | 95.36 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 60.13 | 94.85 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 59.48 | 94.79 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 59.48 | 94.79 |
| Zm00001d007084_P001 | Maize | plastid | 93.46 | 94.08 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 58.82 | 93.75 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 70.59 | 92.31 |
| Zm00001d051591_P001 | Maize | plastid | 92.81 | 92.21 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 91.5 | 92.11 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 89.54 | 91.95 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 95.42 | 91.82 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 90.85 | 91.45 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 94.77 | 91.19 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 81.7 | 90.58 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 79.74 | 90.37 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 81.05 | 89.86 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 79.08 | 89.63 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 90.2 | 89.61 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 83.01 | 89.44 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 80.39 | 89.13 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 80.39 | 89.13 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 85.62 | 88.51 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 77.78 | 88.15 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 86.93 | 88.08 |
| KRH26542 | Soybean | nucleus | 77.12 | 88.06 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 79.74 | 87.77 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 77.12 | 87.41 |
| KRH22818 | Soybean | nucleus | 75.82 | 87.22 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 86.93 | 86.93 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 86.93 | 86.93 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 86.93 | 86.93 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 81.7 | 86.81 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 77.12 | 86.76 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 86.27 | 86.27 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 86.27 | 86.27 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 86.27 | 86.27 |
| TraesCS6B01G048500.1 | Wheat | unclear | 81.7 | 86.21 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 85.62 | 86.18 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 81.05 | 86.11 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 81.05 | 86.11 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 81.05 | 86.11 |
| KRH19721 | Soybean | nucleus | 77.78 | 85.61 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 80.39 | 85.42 |
| PGSC0003DMT400077939 | Potato | nucleus | 81.05 | 84.93 |
| KRG95819 | Soybean | nucleus | 76.47 | 84.78 |
| KRH67549 | Soybean | nucleus | 76.47 | 84.78 |
| KRH34681 | Soybean | nucleus | 75.82 | 84.67 |
| KRG92106 | Soybean | nucleus | 75.16 | 84.56 |
| PGSC0003DMT400043578 | Potato | nucleus | 77.78 | 84.4 |
| Solyc06g075800.1.1 | Tomato | nucleus | 80.39 | 84.25 |
| AT2G37470.1 | Thale cress | nucleus | 75.82 | 84.06 |
| Bra007018.1-P | Field mustard | nucleus | 75.82 | 84.06 |
| Bra006685.1-P | Field mustard | nucleus | 77.12 | 83.69 |
| Solyc03g071620.1.1 | Tomato | nucleus | 77.12 | 83.69 |
| AT3G46030.1 | Thale cress | nucleus | 79.08 | 83.45 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 79.08 | 83.45 |
| AT5G59910.1 | Thale cress | nucleus | 81.7 | 83.33 |
| Bra002520.1-P | Field mustard | nucleus | 81.7 | 83.33 |
| Bra039810.1-P | Field mustard | nucleus | 75.16 | 83.33 |
| Bra020275.1-P | Field mustard | nucleus | 77.12 | 83.1 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 99.35 | 83.06 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 79.08 | 82.88 |
| PGSC0003DMT400070382 | Potato | nucleus | 77.78 | 82.64 |
| AT3G53650.1 | Thale cress | nucleus | 74.51 | 82.61 |
| Bra003150.1-P | Field mustard | nucleus | 74.51 | 82.61 |
| Bra038267.1-P | Field mustard | nucleus | 73.86 | 82.48 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 79.74 | 82.43 |
| PGSC0003DMT400074994 | Potato | nucleus | 79.08 | 82.31 |
| Solyc06g005390.1.1 | Tomato | nucleus | 79.08 | 82.31 |
| Bra002436.1-P | Field mustard | nucleus | 75.82 | 82.27 |
| AT2G28720.1 | Thale cress | nucleus | 81.05 | 82.12 |
| AT3G45980.1 | Thale cress | nucleus | 80.39 | 82.0 |
| Solyc11g007920.1.1 | Tomato | nucleus | 77.12 | 81.94 |
| AT5G02570.1 | Thale cress | nucleus | 70.59 | 81.82 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 76.47 | 81.82 |
| KRH29833 | Soybean | nucleus | 76.47 | 81.82 |
| KRH29831 | Soybean | nucleus | 79.08 | 81.76 |
| KRH29832 | Soybean | nucleus | 79.08 | 81.76 |
| KRH29836 | Soybean | nucleus | 79.08 | 81.76 |
| PGSC0003DMT400070383 | Potato | nucleus | 75.82 | 81.69 |
| PGSC0003DMT400060096 | Potato | nucleus | 78.43 | 81.63 |
| AT5G22880.1 | Thale cress | nucleus | 77.12 | 81.38 |
| KRH24831 | Soybean | nucleus | 79.08 | 81.21 |
| KRH24833 | Soybean | nucleus | 79.08 | 81.21 |
| Solyc06g074790.1.1 | Tomato | nucleus | 75.16 | 80.99 |
| Solyc05g055440.1.1 | Tomato | nucleus | 77.78 | 80.95 |
| Solyc11g066430.1.1 | Tomato | nucleus | 73.86 | 80.71 |
| Bra006639.1-P | Field mustard | nucleus | 75.82 | 80.56 |
| PGSC0003DMT400022074 | Potato | nucleus | 75.82 | 80.56 |
| PGSC0003DMT400022099 | Potato | nucleus | 75.82 | 80.56 |
| Bra011930.1-P | Field mustard | nucleus | 78.43 | 80.54 |
| Bra035677.1-P | Field mustard | nucleus | 78.43 | 80.54 |
| KRH24830 | Soybean | nucleus | 78.43 | 80.54 |
| Solyc11g007930.1.1 | Tomato | nucleus | 72.55 | 80.43 |
| AT1G07790.1 | Thale cress | nucleus | 77.78 | 80.41 |
| AT3G09480.1 | Thale cress | nucleus | 66.01 | 80.16 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 79.08 | 79.61 |
| PGSC0003DMT400018456 | Potato | nucleus | 73.86 | 79.58 |
| Solyc12g013510.1.1 | Tomato | nucleus | 71.9 | 79.14 |
| PGSC0003DMT400018455 | Potato | nucleus | 73.86 | 79.02 |
| PGSC0003DMT400001108 | Potato | nucleus | 73.2 | 78.87 |
| Solyc02g038690.1.1 | Tomato | nucleus | 68.63 | 78.36 |
| Solyc06g074780.1.1 | Tomato | nucleus | 73.2 | 78.32 |
| Bra000483.1-P | Field mustard | nucleus | 79.08 | 78.06 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 76.47 | 76.97 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 67.32 | 76.87 |
| PGSC0003DMT400074020 | Potato | nucleus | 64.05 | 72.59 |
| CDX71015 | Canola | nucleus | 28.76 | 66.67 |
| Solyc10g044580.1.1 | Tomato | nucleus | 54.9 | 62.22 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 57.52 | 53.66 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 80.39 | 53.48 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 68.63 | 50.72 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 46.41 | 23.13 |
| PGSC0003DMT400074018 | Potato | nucleus | 55.56 | 22.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF60 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS1B01G192500 |
| EnsemblPlants:TraesCS1B01G192500.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:344375177..344375638
Molecular Weight (calculated)
16563.2 Da
IEP (calculated)
10.794
GRAVY (calculated)
-0.756
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA GKKPAEEEPA TEKAEKAPAG KKPKAEKRLP AGKTASKEGG GEKRGRKKGK KSVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAGEAAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSS
101: KLAGEAAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.