Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G087190.1 | Barley | nucleus | 98.03 | 99.33 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 61.84 | 96.91 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 96.71 | 96.71 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 96.71 | 96.71 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 60.53 | 95.83 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 60.53 | 95.83 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 60.53 | 95.83 |
| EES00304 | Sorghum | nucleus | 93.42 | 95.3 |
| EES00305 | Sorghum | nucleus | 92.76 | 94.63 |
| EES00399 | Sorghum | nucleus | 92.76 | 94.0 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 93.42 | 93.42 |
| Zm00001d039821_P001 | Maize | plastid | 91.45 | 93.29 |
| EES15460 | Sorghum | nucleus | 92.76 | 92.76 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 71.05 | 92.31 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 81.58 | 91.85 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 92.76 | 91.56 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 85.53 | 91.55 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 92.11 | 91.5 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 82.89 | 91.3 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 89.47 | 91.28 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 90.79 | 90.79 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 90.79 | 90.79 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 82.24 | 90.58 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 81.58 | 89.86 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 81.58 | 89.86 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 79.61 | 89.63 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 81.58 | 89.21 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 86.84 | 89.19 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 79.61 | 88.97 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 78.95 | 88.89 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 92.76 | 88.68 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 92.11 | 88.05 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 88.82 | 87.66 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 86.84 | 87.42 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 77.63 | 87.41 |
| TraesCS6B01G048500.1 | Wheat | unclear | 82.89 | 86.9 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 86.84 | 86.84 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 82.24 | 86.81 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 98.03 | 86.63 |
| KRH22818 | Soybean | nucleus | 75.66 | 86.47 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 86.84 | 86.27 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 86.84 | 86.27 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 86.84 | 86.27 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 81.58 | 86.11 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 81.58 | 86.11 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 81.58 | 86.11 |
| KRH26542 | Soybean | nucleus | 75.66 | 85.82 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 86.18 | 85.62 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 86.18 | 85.62 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 86.18 | 85.62 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 80.92 | 85.42 |
| PGSC0003DMT400077939 | Potato | nucleus | 81.58 | 84.93 |
| Solyc06g075800.1.1 | Tomato | nucleus | 81.58 | 84.93 |
| KRH19721 | Soybean | nucleus | 77.63 | 84.89 |
| Bra007018.1-P | Field mustard | nucleus | 76.97 | 84.78 |
| Bra039810.1-P | Field mustard | nucleus | 76.97 | 84.78 |
| KRG95819 | Soybean | nucleus | 76.97 | 84.78 |
| KRH67549 | Soybean | nucleus | 76.97 | 84.78 |
| KRH34681 | Soybean | nucleus | 76.32 | 84.67 |
| PGSC0003DMT400043578 | Potato | nucleus | 78.29 | 84.4 |
| Solyc03g071620.1.1 | Tomato | nucleus | 78.29 | 84.4 |
| AT2G37470.1 | Thale cress | nucleus | 76.32 | 84.06 |
| Bra038267.1-P | Field mustard | nucleus | 75.66 | 83.94 |
| KRG92106 | Soybean | nucleus | 75.0 | 83.82 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 80.26 | 83.56 |
| AT3G46030.1 | Thale cress | nucleus | 79.61 | 83.45 |
| PGSC0003DMT400070382 | Potato | nucleus | 78.95 | 83.33 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 78.29 | 83.22 |
| Bra020275.1-P | Field mustard | nucleus | 77.63 | 83.1 |
| Solyc06g074790.1.1 | Tomato | nucleus | 77.63 | 83.1 |
| Bra006685.1-P | Field mustard | nucleus | 76.97 | 82.98 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 78.95 | 82.76 |
| AT5G59910.1 | Thale cress | nucleus | 81.58 | 82.67 |
| Bra002520.1-P | Field mustard | nucleus | 81.58 | 82.67 |
| Bra003150.1-P | Field mustard | nucleus | 75.0 | 82.61 |
| PGSC0003DMT400070383 | Potato | nucleus | 76.97 | 82.39 |
| Solyc11g007920.1.1 | Tomato | nucleus | 77.63 | 81.94 |
| AT3G53650.1 | Thale cress | nucleus | 74.34 | 81.88 |
| AT5G02570.1 | Thale cress | nucleus | 71.05 | 81.82 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 79.61 | 81.76 |
| PGSC0003DMT400018456 | Potato | nucleus | 76.32 | 81.69 |
| Bra002436.1-P | Field mustard | nucleus | 75.66 | 81.56 |
| AT2G28720.1 | Thale cress | nucleus | 80.92 | 81.46 |
| Solyc11g066430.1.1 | Tomato | nucleus | 75.0 | 81.43 |
| AT3G45980.1 | Thale cress | nucleus | 80.26 | 81.33 |
| Bra035677.1-P | Field mustard | nucleus | 79.61 | 81.21 |
| Solyc11g007930.1.1 | Tomato | nucleus | 73.68 | 81.16 |
| KRH29833 | Soybean | nucleus | 76.32 | 81.12 |
| PGSC0003DMT400018455 | Potato | nucleus | 76.32 | 81.12 |
| Solyc06g074780.1.1 | Tomato | nucleus | 76.32 | 81.12 |
| PGSC0003DMT400060096 | Potato | nucleus | 78.29 | 80.95 |
| PGSC0003DMT400074994 | Potato | nucleus | 78.29 | 80.95 |
| Solyc06g005390.1.1 | Tomato | nucleus | 78.29 | 80.95 |
| AT5G22880.1 | Thale cress | nucleus | 76.97 | 80.69 |
| Bra011930.1-P | Field mustard | nucleus | 78.95 | 80.54 |
| KRH24830 | Soybean | nucleus | 78.95 | 80.54 |
| KRH29831 | Soybean | nucleus | 78.29 | 80.41 |
| KRH29832 | Soybean | nucleus | 78.29 | 80.41 |
| KRH29836 | Soybean | nucleus | 78.29 | 80.41 |
| PGSC0003DMT400001108 | Potato | nucleus | 75.0 | 80.28 |
| Solyc05g055440.1.1 | Tomato | nucleus | 77.63 | 80.27 |
| AT3G09480.1 | Thale cress | nucleus | 66.45 | 80.16 |
| KRH24831 | Soybean | nucleus | 78.29 | 79.87 |
| KRH24833 | Soybean | nucleus | 78.29 | 79.87 |
| Bra006639.1-P | Field mustard | nucleus | 75.66 | 79.86 |
| PGSC0003DMT400022074 | Potato | nucleus | 75.66 | 79.86 |
| PGSC0003DMT400022099 | Potato | nucleus | 75.66 | 79.86 |
| AT1G07790.1 | Thale cress | nucleus | 77.63 | 79.73 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 79.61 | 79.61 |
| Solyc12g013510.1.1 | Tomato | nucleus | 72.37 | 79.14 |
| Solyc02g038690.1.1 | Tomato | nucleus | 69.74 | 79.1 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 69.74 | 79.1 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 78.29 | 78.29 |
| Bra000483.1-P | Field mustard | nucleus | 79.61 | 78.06 |
| PGSC0003DMT400074020 | Potato | nucleus | 63.82 | 71.85 |
| CDX71015 | Canola | nucleus | 28.95 | 66.67 |
| Solyc10g044580.1.1 | Tomato | nucleus | 54.61 | 61.48 |
| Zm00001d048491_P001 | Maize | plastid | 92.11 | 58.82 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 57.24 | 53.05 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 80.26 | 53.04 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 69.08 | 50.72 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 45.39 | 22.48 |
| PGSC0003DMT400074018 | Potato | nucleus | 55.92 | 22.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS4B01G054200 |
| EnsemblPlants:TraesCS4B01G054200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:43061222..43061680
Molecular Weight (calculated)
16391.1 Da
IEP (calculated)
10.769
GRAVY (calculated)
-0.620
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AKKPVEEEPA AEKAEKTPAG KKPKAEKRLP AGKSSAAAKE GGKAKKKAKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK
101: LAGEAAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
101: LAGEAAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.