Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g038690.1.1 | Tomato | nucleus | 93.53 | 97.01 |
| GSMUA_Achr8P20900_001 | Banana | nucleus | 45.32 | 95.45 |
| PGSC0003DMT400022074 | Potato | nucleus | 97.84 | 94.44 |
| Solyc11g007930.1.1 | Tomato | nucleus | 93.53 | 94.2 |
| GSMUA_Achr10P... | Banana | nucleus | 43.88 | 92.42 |
| Solyc03g071620.1.1 | Tomato | nucleus | 93.53 | 92.2 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 43.17 | 90.91 |
| Bra006685.1-P | Field mustard | nucleus | 91.37 | 90.07 |
| CDX71064 | Canola | nucleus | 91.37 | 90.07 |
| CDX88732 | Canola | nucleus | 91.37 | 90.07 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 74.82 | 88.89 |
| Solyc11g007920.1.1 | Tomato | nucleus | 91.37 | 88.19 |
| Solyc05g055440.1.1 | Tomato | nucleus | 92.09 | 87.07 |
| Os05t0460475-00 | Rice | nucleus | 66.19 | 86.79 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 59.71 | 86.46 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 59.71 | 86.46 |
| CDX71019 | Canola | nucleus | 87.77 | 85.92 |
| Bra002436.1-P | Field mustard | nucleus | 87.05 | 85.82 |
| CDY26964 | Canola | nucleus | 87.05 | 85.82 |
| Solyc11g066430.1.1 | Tomato | nucleus | 86.33 | 85.71 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 59.71 | 85.57 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 58.99 | 85.42 |
| Solyc06g074790.1.1 | Tomato | nucleus | 87.05 | 85.21 |
| Solyc06g075800.1.1 | Tomato | nucleus | 89.21 | 84.93 |
| Bra006639.1-P | Field mustard | nucleus | 87.77 | 84.72 |
| CDX88779 | Canola | nucleus | 87.77 | 84.72 |
| Solyc06g074780.1.1 | Tomato | nucleus | 87.05 | 84.62 |
| KRH29831 | Soybean | nucleus | 89.93 | 84.46 |
| KRH29832 | Soybean | nucleus | 89.93 | 84.46 |
| KRH29836 | Soybean | nucleus | 89.93 | 84.46 |
| AT5G22880.1 | Thale cress | nucleus | 87.77 | 84.14 |
| KRH29833 | Soybean | nucleus | 86.33 | 83.92 |
| KRH24831 | Soybean | nucleus | 89.93 | 83.89 |
| KRH24833 | Soybean | nucleus | 89.93 | 83.89 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 87.05 | 83.45 |
| KRH24830 | Soybean | nucleus | 89.21 | 83.22 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 81.3 | 83.09 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 81.3 | 83.09 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 81.3 | 83.09 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 82.01 | 82.61 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 84.89 | 82.52 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 80.58 | 82.35 |
| Solyc06g005390.1.1 | Tomato | nucleus | 87.05 | 82.31 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 56.83 | 82.29 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 79.86 | 82.22 |
| CDX92329 | Canola | nucleus | 84.89 | 81.94 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 77.7 | 80.0 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 67.63 | 79.66 |
| EES18353 | Sorghum | nucleus | 84.17 | 79.59 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 76.98 | 79.26 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 76.98 | 79.26 |
| TraesCSU01G077200.1 | Wheat | nucleus | 76.98 | 79.26 |
| Os01t0839500-00 | Rice | nucleus | 79.14 | 79.14 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 84.17 | 79.05 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 76.98 | 78.68 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 76.26 | 78.52 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 76.26 | 78.52 |
| TraesCSU01G077400.1 | Wheat | nucleus | 76.26 | 78.52 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 76.26 | 77.94 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 76.26 | 77.94 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 76.26 | 77.94 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 75.54 | 77.78 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 77.7 | 77.7 |
| EES03855 | Sorghum | nucleus | 76.26 | 77.37 |
| Zm00001d012423_P001 | Maize | plastid | 76.26 | 77.37 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 75.54 | 77.21 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 76.26 | 76.81 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 76.26 | 76.81 |
| Zm00001d042930_P001 | Maize | plastid | 75.54 | 76.64 |
| EES00304 | Sorghum | nucleus | 82.01 | 76.51 |
| OQU92807 | Sorghum | nucleus | 81.3 | 76.35 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 75.54 | 76.09 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 75.54 | 76.09 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 75.54 | 76.09 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 75.54 | 76.09 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 77.7 | 76.06 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 77.7 | 76.06 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 77.7 | 76.06 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 77.7 | 76.06 |
| EES00399 | Sorghum | nucleus | 82.01 | 76.0 |
| EES00305 | Sorghum | nucleus | 81.3 | 75.84 |
| Zm00001d039821_P001 | Maize | plastid | 81.3 | 75.84 |
| Os03t0279000-00 | Rice | nucleus | 82.73 | 75.66 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 74.82 | 75.36 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 74.82 | 75.36 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 74.82 | 75.36 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 76.98 | 75.35 |
| Zm00001d011236_P001 | Maize | plastid | 81.3 | 75.33 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 82.01 | 75.0 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 82.01 | 75.0 |
| TraesCSU01G169300.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G169400.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G169500.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G169700.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G169800.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G169900.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G170400.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G170500.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G170600.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G170700.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G170900.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G171000.1 | Wheat | nucleus | 79.86 | 75.0 |
| TraesCSU01G171100.1 | Wheat | nucleus | 79.86 | 75.0 |
| Zm00001d007084_P001 | Maize | plastid | 82.01 | 75.0 |
| Zm00001d044247_P001 | Maize | plastid | 79.86 | 75.0 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 74.82 | 74.82 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 66.19 | 74.8 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 74.1 | 74.64 |
| EER96770 | Sorghum | nucleus | 82.01 | 74.51 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 79.86 | 74.5 |
| EES15460 | Sorghum | nucleus | 81.3 | 74.34 |
| Os05t0574300-00 | Rice | nucleus | 81.3 | 74.34 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 81.3 | 74.34 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 81.3 | 74.34 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 81.3 | 74.34 |
| Zm00001d005789_P001 | Maize | plastid | 81.3 | 74.34 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 74.82 | 74.29 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 74.82 | 74.29 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 74.1 | 74.1 |
| Os01t0153100-00 | Rice | nucleus | 81.3 | 73.86 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 79.14 | 73.83 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 80.58 | 73.68 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 80.58 | 73.68 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 79.86 | 73.51 |
| Zm00001d020580_P001 | Maize | plastid | 79.86 | 73.51 |
| Zm00001d050100_P001 | Maize | plastid | 79.14 | 73.33 |
| OQU87075 | Sorghum | nucleus | 80.58 | 73.2 |
| Os01t0149600-01 | Rice | nucleus | 80.58 | 73.2 |
| Os01t0152900-00 | Rice | nucleus | 80.58 | 73.2 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 74.1 | 73.05 |
| EES15092 | Sorghum | nucleus | 79.14 | 72.85 |
| Zm00001d051591_P001 | Maize | plastid | 80.58 | 72.73 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 78.42 | 72.67 |
| Zm00001d025913_P001 | Maize | plastid | 78.42 | 72.67 |
| Zm00001d032070_P001 | Maize | plastid | 78.42 | 72.67 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 82.01 | 72.61 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 53.24 | 72.55 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 79.14 | 72.37 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 79.14 | 72.37 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 79.14 | 72.37 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 79.14 | 72.37 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 79.14 | 72.37 |
| EES07386 | Sorghum | nucleus | 80.58 | 72.26 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 74.82 | 72.22 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 79.14 | 71.9 |
| Os01t0152300-00 | Rice | nucleus | 79.14 | 71.9 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 79.14 | 71.9 |
| TraesCS6B01G048500.1 | Wheat | unclear | 74.82 | 71.72 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 69.06 | 71.64 |
| Os01t0153300-00 | Rice | nucleus | 79.86 | 71.61 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 74.1 | 71.53 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 74.1 | 71.53 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 74.1 | 71.53 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 74.1 | 71.53 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 74.1 | 71.53 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 74.1 | 71.53 |
| EER97675 | Sorghum | nucleus | 77.7 | 71.52 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 77.7 | 71.52 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 79.14 | 71.43 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 76.98 | 71.33 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 60.43 | 71.19 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 74.1 | 71.03 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 73.38 | 70.83 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 78.42 | 70.78 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 80.58 | 70.44 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 80.58 | 70.44 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 76.98 | 69.93 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 78.42 | 69.87 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 72.66 | 69.66 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 76.26 | 69.28 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 75.54 | 69.08 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 76.98 | 69.03 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 65.47 | 68.94 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 58.99 | 68.91 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 76.26 | 68.83 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 77.7 | 68.79 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 75.54 | 68.63 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 75.54 | 68.63 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 75.54 | 68.63 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 77.7 | 67.92 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 74.82 | 67.53 |
| TraesCSU01G081100.1 | Wheat | nucleus | 74.1 | 66.88 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 75.54 | 66.88 |
| Solyc10g044580.1.1 | Tomato | nucleus | 64.75 | 66.67 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 84.17 | 66.48 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 77.7 | 66.26 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 77.7 | 65.85 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 55.4 | 65.81 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 76.98 | 65.24 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 77.7 | 65.06 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 75.54 | 64.42 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 78.42 | 63.37 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 76.98 | 62.94 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 80.58 | 61.88 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 75.54 | 60.69 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 79.86 | 60.66 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 77.7 | 60.34 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 79.14 | 60.11 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 76.98 | 59.44 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 76.98 | 59.44 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 72.66 | 59.06 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 79.86 | 53.11 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 80.58 | 52.83 |
| Os08t0490900-00 | Rice | nucleus | 80.58 | 52.83 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 69.06 | 52.17 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 79.14 | 52.13 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 74.82 | 49.52 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 73.38 | 49.28 |
| Zm00001d048491_P001 | Maize | plastid | 80.58 | 47.06 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 81.3 | 46.5 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 51.8 | 43.9 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 52.52 | 36.87 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 51.8 | 34.45 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 51.08 | 25.09 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| UniProt:K4DCN6 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF106 |
| SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc12g013510.1 | EnsemblPlants:Solyc12g013510.1.1 | UniParc:UPI000276A31C | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4DCN6]
Coordinates
chr12:+:4379771..4380190
Molecular Weight (calculated)
15041.4 Da
IEP (calculated)
10.858
GRAVY (calculated)
-0.501
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AEKAPAAAAE KSKAGKKLPK DGGAAAAVDK KKKRSKKSIE TYKIYIFKVL KQVHPDIGIS SKAMGIMNSF INDIFEKLAQ ESSRLARYNK
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTSS
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.