CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88732	Canola	nucleus	99.29	99.29
CDX71019	Canola	nucleus	94.33	93.66
CDY26964	Canola	nucleus	92.91	92.91
CDX88779	Canola	nucleus	94.33	92.36
Solyc12g013510.1.1	Tomato	nucleus	90.07	91.37
Solyc11g007930.1.1	Tomato	nucleus	89.36	91.3
Solyc02g038690.1.1	Tomato	nucleus	86.52	91.04
PGSC0003DMT400070383	Potato	nucleus	91.49	90.85
PGSC0003DMT400022099	Potato	nucleus	91.49	89.58
PGSC0003DMT400022074	Potato	nucleus	91.49	89.58
CDX86049	Canola	nucleus	83.69	89.39
CDX92329	Canola	nucleus	90.78	88.89
CDY09241	Canola	nucleus	88.65	88.03
CDX99134	Canola	nucleus	85.11	87.59
CDX80214	Canola	nucleus	92.91	87.33
CDY31584	Canola	nucleus	92.91	87.33
CDY30852	Canola	nucleus	85.11	86.96
CDY15776	Canola	nucleus	90.78	86.49
VIT_13s0019g05370.t01	Wine grape	nucleus	88.65	86.21
CDY71843	Canola	nucleus	90.78	85.91
KRH29831	Soybean	nucleus	90.07	85.81
KRH29832	Soybean	nucleus	90.07	85.81
KRH29836	Soybean	nucleus	90.07	85.81
CDY52745	Canola	nucleus	82.98	85.4
KRH29833	Soybean	nucleus	86.52	85.31
KRH24831	Soybean	nucleus	90.07	85.23
KRH24833	Soybean	nucleus	90.07	85.23
CDX95762	Canola	nucleus	90.78	84.77
KRH24830	Soybean	nucleus	89.36	84.56
CDY72471	Canola	nucleus	91.49	84.31
CDX77199	Canola	nucleus	91.49	83.77
CDX83300	Canola	nucleus	90.78	82.58
PGSC0003DMT400074020	Potato	nucleus	77.31	80.74
Solyc10g044580.1.1	Tomato	nucleus	64.54	67.41
CDX71015	Canola	nucleus	31.21	66.67
CDX93584	Canola	nucleus	49.65	27.24
PGSC0003DMT400074018	Potato	nucleus	63.12	23.36
CDX95087	Canola	nucleus	48.94	21.63

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:A0A078C4J8	EnsemblPlants:CDX71064	ProteinID:CDX71064	ProteinID:CDX71064.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00141012001	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357
PANTHER:PTHR23428	PANTHER:PTHR23428:SF106	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0000E646DD	SEG:seg

Description

BnaC03g11480D

Coordinates

chrLK031791:-:3493989..3494660

Molecular Weight (calculated)

15395.9 Da

IEP (calculated)

10.852

GRAVY (calculated)

-0.653

Length

141 amino acids

Sequence
(BLAST)

001: MAPKAAEKKP AEKKTAEKAP AEKKPKAGKK LPKDPSAVAG DKKKKRSKKS VETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL AGESSKLARY
101: NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.