Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039810.1-P | Field mustard | nucleus | 99.28 | 99.28 |
| CDY52745 | Canola | nucleus | 97.1 | 97.81 |
| AT2G37470.1 | Thale cress | nucleus | 94.2 | 94.2 |
| CDX86049 | Canola | nucleus | 87.68 | 91.67 |
| KRH67549 | Soybean | nucleus | 91.3 | 91.3 |
| KRG95819 | Soybean | nucleus | 91.3 | 91.3 |
| KRH19721 | Soybean | nucleus | 91.3 | 90.65 |
| CDX99134 | Canola | nucleus | 89.13 | 89.78 |
| KRG92106 | Soybean | nucleus | 87.68 | 88.97 |
| KRH34681 | Soybean | nucleus | 86.96 | 87.59 |
| Solyc11g066430.1.1 | Tomato | nucleus | 88.41 | 87.14 |
| PGSC0003DMT400001108 | Potato | nucleus | 88.41 | 85.92 |
| Solyc06g074790.1.1 | Tomato | nucleus | 87.68 | 85.21 |
| CDX88732 | Canola | nucleus | 86.96 | 85.11 |
| CDX71064 | Canola | nucleus | 86.96 | 85.11 |
| PGSC0003DMT400018456 | Potato | nucleus | 86.96 | 84.51 |
| CDY09241 | Canola | nucleus | 86.96 | 84.51 |
| CDY31584 | Canola | nucleus | 91.3 | 84.0 |
| CDX80214 | Canola | nucleus | 91.3 | 84.0 |
| CDX71019 | Canola | nucleus | 86.23 | 83.8 |
| CDY26964 | Canola | nucleus | 85.51 | 83.69 |
| CDY15776 | Canola | nucleus | 89.13 | 83.11 |
| CDY71843 | Canola | nucleus | 89.13 | 82.55 |
| CDX88779 | Canola | nucleus | 85.51 | 81.94 |
| CDX95762 | Canola | nucleus | 89.13 | 81.46 |
| Solyc06g074780.1.1 | Tomato | nucleus | 84.06 | 81.12 |
| PGSC0003DMT400018455 | Potato | nucleus | 84.06 | 81.12 |
| CDY72471 | Canola | nucleus | 89.86 | 81.05 |
| CDX77199 | Canola | nucleus | 89.86 | 80.52 |
| CDX92329 | Canola | nucleus | 83.33 | 79.86 |
| CDX83300 | Canola | nucleus | 89.13 | 79.35 |
| CDX71015 | Canola | nucleus | 31.88 | 66.67 |
| CDX93584 | Canola | nucleus | 52.17 | 28.02 |
| CDX95087 | Canola | nucleus | 51.45 | 22.26 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078H035 | UniProt:A0A078H035 | EnsemblPlants:CDY30852 | ProteinID:CDY30852 |
| ProteinID:CDY30852.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00046325001 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF155 | SMART:SM00427 |
| SUPFAM:SSF47113 | UniParc:UPI0001817F63 | SEG:seg | : | : | : |
Description
BnaC04g27070DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078H035]
Coordinates
chrLK032262:-:155678..156252
Molecular Weight (calculated)
15257.7 Da
IEP (calculated)
10.796
GRAVY (calculated)
-0.771
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAAEKKP AEKKPAEKSP AEKRPKAEKK ISKEGGSDKK KKKSKKSVET YKIYIFKVLK QVHPDIGISG KAMGIMNSFI NDIFEKLAQE SSKLARYNKK
101: PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTST
101: PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTST
001: MAPKAAEKKP AEKKPAGKAP AEKLPKAEKK ISKDAGGSEK KKKKSKKSVE TYKIYIFKVL KQVHPDVGIS GKAMGIMNSF INDIFEKLAQ ESSKLARYNK
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS
Arabidopsis Description
Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.