Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000483.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX95762 | Canola | nucleus | 97.42 | 100.0 |
| CDY72471 | Canola | nucleus | 97.42 | 98.69 |
| CDX77199 | Canola | nucleus | 97.42 | 98.05 |
| CDY71843 | Canola | nucleus | 93.55 | 97.32 |
| CDY15776 | Canola | nucleus | 92.9 | 97.3 |
| CDX86049 | Canola | nucleus | 78.06 | 91.67 |
| CDX71064 | Canola | nucleus | 82.58 | 90.78 |
| CDX88732 | Canola | nucleus | 82.58 | 90.78 |
| AT2G28720.1 | Thale cress | nucleus | 88.39 | 90.73 |
| CDX80214 | Canola | nucleus | 87.74 | 90.67 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 84.52 | 90.34 |
| CDY09241 | Canola | nucleus | 82.58 | 90.14 |
| CDY31584 | Canola | nucleus | 87.1 | 90.0 |
| CDX99134 | Canola | nucleus | 79.35 | 89.78 |
| CDY30852 | Canola | nucleus | 79.35 | 89.13 |
| CDY52745 | Canola | nucleus | 78.71 | 89.05 |
| CDX71019 | Canola | nucleus | 81.29 | 88.73 |
| CDY26964 | Canola | nucleus | 80.65 | 88.65 |
| KRH29836 | Soybean | nucleus | 83.87 | 87.84 |
| KRH29832 | Soybean | nucleus | 83.87 | 87.84 |
| KRH29831 | Soybean | nucleus | 83.87 | 87.84 |
| CDX88779 | Canola | nucleus | 81.29 | 87.5 |
| KRH29833 | Soybean | nucleus | 80.65 | 87.41 |
| KRH24831 | Soybean | nucleus | 83.87 | 87.25 |
| KRH24833 | Soybean | nucleus | 83.87 | 87.25 |
| KRH24830 | Soybean | nucleus | 83.23 | 86.58 |
| CDX92329 | Canola | nucleus | 78.71 | 84.72 |
| CDX71015 | Canola | nucleus | 28.39 | 66.67 |
| CDX93584 | Canola | nucleus | 49.03 | 29.57 |
| CDX95087 | Canola | nucleus | 48.39 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078D2E6 | EnsemblPlants:CDX83300 | ProteinID:CDX83300 | ProteinID:CDX83300.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00138855001 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000253FFA9 | SEG:seg |
Description
BnaA03g22060D
Coordinates
chrLK031832:+:923430..924118
Molecular Weight (calculated)
16855.7 Da
IEP (calculated)
10.743
GRAVY (calculated)
-0.613
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAGKKPA EKKPAAAAAA AEKPVEEEKV AEKAPAEKKP KAGKKLPKEA IGATDKKKKR SKKNIETYKI YIFKVLKQVH PDIGISSKAM GIMNSFINDI
101: FEKLAQEASK LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
101: FEKLAQEASK LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
Arabidopsis Description
Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.