Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020275.1-P | Field mustard | nucleus | 95.77 | 95.77 |
| CDX86049 | Canola | nucleus | 85.92 | 92.42 |
| AT5G59910.1 | Thale cress | nucleus | 97.18 | 92.0 |
| CDX80214 | Canola | nucleus | 97.18 | 92.0 |
| CDY31584 | Canola | nucleus | 97.18 | 92.0 |
| CDX99134 | Canola | nucleus | 86.62 | 89.78 |
| CDX71064 | Canola | nucleus | 88.03 | 88.65 |
| CDX88732 | Canola | nucleus | 88.03 | 88.65 |
| CDY15776 | Canola | nucleus | 90.85 | 87.16 |
| CDY30852 | Canola | nucleus | 84.51 | 86.96 |
| CDY71843 | Canola | nucleus | 90.85 | 86.58 |
| CDY26964 | Canola | nucleus | 85.92 | 86.52 |
| CDX71019 | Canola | nucleus | 85.92 | 85.92 |
| CDY52745 | Canola | nucleus | 82.39 | 85.4 |
| CDX95762 | Canola | nucleus | 90.14 | 84.77 |
| CDX88779 | Canola | nucleus | 85.92 | 84.72 |
| CDY72471 | Canola | nucleus | 90.85 | 84.31 |
| CDX77199 | Canola | nucleus | 90.85 | 83.77 |
| CDX92329 | Canola | nucleus | 83.8 | 82.64 |
| CDX83300 | Canola | nucleus | 90.14 | 82.58 |
| CDX71015 | Canola | nucleus | 31.69 | 68.18 |
| CDX93584 | Canola | nucleus | 53.52 | 29.57 |
| CDX95087 | Canola | nucleus | 52.82 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078F776 | UniProt:A0A078F776 | EnsemblPlants:CDY09241 | ProteinID:CDY09241 |
| ProteinID:CDY09241.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0009534 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00001495001 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 |
| SUPFAM:SSF47113 | UniParc:UPI0004EE8AAB | SEG:seg | : | : | : |
Description
BnaA02g06670DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078F776]
Coordinates
chrLK031993:-:910365..910848
Molecular Weight (calculated)
15412.9 Da
IEP (calculated)
10.770
GRAVY (calculated)
-0.689
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EEKSKAEKAP AEKKPKAGKK LPKEAGAGTG GDKKKKTKKK SVETYKIYIF KVLKQVHPDI GISSKAMGIM NSFINDIFEK LAGEASKLAR
101: YNKKPTITSR EIQTAVRLVL PGELAKHAVS EGTKAVTKFT SS
101: YNKKPTITSR EIQTAVRLVL PGELAKHAVS EGTKAVTKFT SS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.