CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88779	Canola	nucleus	99.3	97.92
CDY26964	Canola	nucleus	96.48	97.16
CDX71064	Canola	nucleus	93.66	94.33
CDX88732	Canola	nucleus	92.96	93.62
CDX92329	Canola	nucleus	94.37	93.06
AT5G22880.1	Thale cress	nucleus	94.37	92.41
CDX86049	Canola	nucleus	84.51	90.91
Solyc02g038690.1.1	Tomato	nucleus	84.51	89.55
PGSC0003DMT400070383	Potato	nucleus	89.44	89.44
CDX99134	Canola	nucleus	85.21	88.32
PGSC0003DMT400022074	Potato	nucleus	89.44	88.19
PGSC0003DMT400022099	Potato	nucleus	89.44	88.19
Solyc12g013510.1.1	Tomato	nucleus	85.92	87.77
Solyc11g007930.1.1	Tomato	nucleus	85.21	87.68
CDY30852	Canola	nucleus	83.8	86.23
CDY09241	Canola	nucleus	85.92	85.92
KRH29831	Soybean	nucleus	89.44	85.81
KRH29832	Soybean	nucleus	89.44	85.81
KRH29836	Soybean	nucleus	89.44	85.81
CDY31584	Canola	nucleus	90.14	85.33
CDX80214	Canola	nucleus	90.14	85.33
KRH29833	Soybean	nucleus	85.92	85.31
KRH24831	Soybean	nucleus	89.44	85.23
KRH24833	Soybean	nucleus	89.44	85.23
CDY15776	Canola	nucleus	88.73	85.14
CDY52745	Canola	nucleus	81.69	84.67
CDY71843	Canola	nucleus	88.73	84.56
KRH24830	Soybean	nucleus	88.73	84.56
VIT_13s0019g05370.t01	Wine grape	nucleus	85.92	84.14
CDX95762	Canola	nucleus	88.73	83.44
CDY72471	Canola	nucleus	89.44	83.01
CDX77199	Canola	nucleus	89.44	82.47
CDX83300	Canola	nucleus	88.73	81.29
PGSC0003DMT400074020	Potato	nucleus	73.94	77.78
CDX71015	Canola	nucleus	30.99	66.67
Solyc10g044580.1.1	Tomato	nucleus	62.68	65.93
CDX93584	Canola	nucleus	49.3	27.24
PGSC0003DMT400074018	Potato	nucleus	61.27	22.83
CDX95087	Canola	nucleus	49.3	21.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:A0A078C4G0	EnsemblPlants:CDX71019	ProteinID:CDX71019	ProteinID:CDX71019.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982
EnsemblPlantsGene:GSBRNA2T00140958001	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125
PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF106	SMART:SM00427	SUPFAM:SSF47113
UniParc:UPI0004EEEA96	SEG:seg	:	:	:	:

Description

BnaC03g11030D

Coordinates

chrLK031791:-:3273832..3274466

Molecular Weight (calculated)

15429.9 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.607

Length

142 amino acids

Sequence
(BLAST)

001: MAKADKKPAE KKPAAETTTA AAEKKPKAGK KLPKDPSAVA GDKKKKRSKK SVETYKIYIF KVLKQVHPDI GISSKAMGIM NSFINDIFEK LAGESSKLAR
101: YNKKPTITSR EIQTAVRLVL PGELAKHAVS EGTKAVTKFT SS

Best Arabidopsis Sequence Match ( AT5G22880.1 )
(BLAST)

001: MAKADKKPAE KKPAEKTPAA EPAAAAEKKP KAGKKLPKEP AGAGDKKKKR SKKNVETYKI YIFKVLKQVH PDIGISSKAM GIMNSFINDI FEKLAGESSK
101: LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.