CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018647.1-P	Field mustard	nucleus	100.0	100.0
CDX95087	Canola	nucleus	88.72	71.47
AT1G08170.1	Thale cress	nucleus	65.76	69.55
TraesCS4A01G311600.1	Wheat	mitochondrion	20.23	58.43
CDX86049	Canola	nucleus	27.63	53.79
CDY09241	Canola	nucleus	29.57	53.52
CDY30852	Canola	nucleus	28.02	52.17
CDY52745	Canola	nucleus	27.63	51.82
CDX99134	Canola	nucleus	27.63	51.82
CDY15776	Canola	nucleus	29.57	51.35
CDY71843	Canola	nucleus	29.57	51.01
CDX80214	Canola	nucleus	29.57	50.67
CDY31584	Canola	nucleus	29.57	50.67
CDX95762	Canola	nucleus	29.57	50.33
CDY72471	Canola	nucleus	29.57	49.67
CDY26964	Canola	nucleus	27.24	49.65
CDX88732	Canola	nucleus	27.24	49.65
CDX71064	Canola	nucleus	27.24	49.65
CDX77199	Canola	nucleus	29.57	49.35
CDX88779	Canola	nucleus	27.63	49.31
CDX71019	Canola	nucleus	27.24	49.3
CDX83300	Canola	nucleus	29.57	49.03
CDX92329	Canola	nucleus	26.85	47.92
VIT_06s0061g00870.t01	Wine grape	nucleus	36.58	43.52
KRH30545	Soybean	mitochondrion, nucleus	32.3	41.71
KRH25129	Soybean	nucleus	35.41	40.44
Os09t0570850-00	Rice	nucleus	23.74	40.13
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	32.68	40.0
CDX71015	Canola	nucleus	10.12	39.39
HORVU4Hr1G000750.1	Barley	nucleus	24.51	35.39
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	32.3	30.4
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	31.91	28.98
Zm00001d005322_P001	Maize	nucleus	27.24	26.72
EER98531	Sorghum	nucleus	29.96	25.75
TraesCS4B01G002800.1	Wheat	nucleus	28.02	23.45

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:A0A078DYU0	EnsemblPlants:CDX93584	ProteinID:CDX93584	ProteinID:CDX93584.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00156264001	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621	PANTHER:PTHR23428
PANTHER:PTHR23428:SF50	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000253E71B	SEG:seg	:

Description

BnaA06g04640D

Coordinates

chrLK031876:+:821276..822049

Molecular Weight (calculated)

28669.0 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.797

Length

257 amino acids

Sequence
(BLAST)

001: MAPRKSKKVV SVTKKKKVVE ETIKVTVTDG VPNVTTNTDT QETQYLETQE LDTQELETQD LPFSLPLEEE NVTRVEIPVD VGYDRSPPPP ETVAPASEGT
101: VKETHKVEIP VEFGDDRSPQ PPETPAPASE VPAKETHKDE EKQGNKKTTS KKRKKNRSEV AGDEYKRYVY KVMKQVHPDL GISSKAMTVI NMFMGDMFER
201: LAVEAAKLND YSKRRTLSSR EIEAAVRLVL PGELSRHAVA EGSKAVSNFV AYGAKKR

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.