Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000483.1-P | Field mustard | nucleus | 100.0 | 97.42 |
| CDX83300 | Canola | nucleus | 100.0 | 97.42 |
| CDY15776 | Canola | nucleus | 95.36 | 97.3 |
| CDY71843 | Canola | nucleus | 95.36 | 96.64 |
| CDY72471 | Canola | nucleus | 97.35 | 96.08 |
| CDX77199 | Canola | nucleus | 97.35 | 95.45 |
| CDX86049 | Canola | nucleus | 80.13 | 91.67 |
| CDX71064 | Canola | nucleus | 84.77 | 90.78 |
| CDX88732 | Canola | nucleus | 84.77 | 90.78 |
| AT2G28720.1 | Thale cress | nucleus | 90.73 | 90.73 |
| CDX80214 | Canola | nucleus | 90.07 | 90.67 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 86.75 | 90.34 |
| CDY09241 | Canola | nucleus | 84.77 | 90.14 |
| CDY31584 | Canola | nucleus | 89.4 | 90.0 |
| CDX99134 | Canola | nucleus | 81.46 | 89.78 |
| CDY30852 | Canola | nucleus | 81.46 | 89.13 |
| CDY52745 | Canola | nucleus | 80.79 | 89.05 |
| CDX71019 | Canola | nucleus | 83.44 | 88.73 |
| CDY26964 | Canola | nucleus | 82.78 | 88.65 |
| KRH29836 | Soybean | nucleus | 86.09 | 87.84 |
| KRH29832 | Soybean | nucleus | 86.09 | 87.84 |
| KRH29831 | Soybean | nucleus | 86.09 | 87.84 |
| CDX88779 | Canola | nucleus | 83.44 | 87.5 |
| KRH29833 | Soybean | nucleus | 82.78 | 87.41 |
| KRH24831 | Soybean | nucleus | 86.09 | 87.25 |
| KRH24833 | Soybean | nucleus | 86.09 | 87.25 |
| KRH24830 | Soybean | nucleus | 85.43 | 86.58 |
| CDX92329 | Canola | nucleus | 80.79 | 84.72 |
| CDX71015 | Canola | nucleus | 29.14 | 66.67 |
| CDX93584 | Canola | nucleus | 50.33 | 29.57 |
| CDX95087 | Canola | nucleus | 49.67 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078E3P0 | EnsemblPlants:CDX95762 | ProteinID:CDX95762 | ProteinID:CDX95762.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00101674001 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 |
| PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 | SUPFAM:SSF47113 |
| UniParc:UPI0001BA8DAE | SEG:seg | : | : | : | : |
Description
BnaC03g26430D
Coordinates
chrLK031890:-:1244485..1245161
Molecular Weight (calculated)
16571.4 Da
IEP (calculated)
10.743
GRAVY (calculated)
-0.677
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAGKKPA EKKPAAAEKP VEEEKVAEKA PAEKKPKAGK KLPKEAIGAT DKKKKRSKKN IETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
Arabidopsis Description
Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.