Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15776 | Canola | nucleus | 99.33 | 100.0 |
| Bra011930.1-P | Field mustard | nucleus | 99.33 | 99.33 |
| CDY72471 | Canola | nucleus | 98.66 | 96.08 |
| CDX77199 | Canola | nucleus | 98.66 | 95.45 |
| CDX95762 | Canola | nucleus | 96.64 | 95.36 |
| CDX83300 | Canola | nucleus | 97.32 | 93.55 |
| CDX86049 | Canola | nucleus | 81.21 | 91.67 |
| CDY31584 | Canola | nucleus | 91.95 | 91.33 |
| CDY09241 | Canola | nucleus | 86.58 | 90.85 |
| CDX71064 | Canola | nucleus | 85.91 | 90.78 |
| CDX88732 | Canola | nucleus | 85.91 | 90.78 |
| AT2G28720.1 | Thale cress | nucleus | 91.95 | 90.73 |
| CDX80214 | Canola | nucleus | 91.28 | 90.67 |
| CDX99134 | Canola | nucleus | 82.55 | 89.78 |
| CDY26964 | Canola | nucleus | 84.56 | 89.36 |
| KRH29836 | Soybean | nucleus | 88.59 | 89.19 |
| KRH29831 | Soybean | nucleus | 88.59 | 89.19 |
| KRH29832 | Soybean | nucleus | 88.59 | 89.19 |
| CDY30852 | Canola | nucleus | 82.55 | 89.13 |
| CDY52745 | Canola | nucleus | 81.88 | 89.05 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 86.58 | 88.97 |
| KRH29833 | Soybean | nucleus | 85.23 | 88.81 |
| CDX71019 | Canola | nucleus | 84.56 | 88.73 |
| KRH24831 | Soybean | nucleus | 88.59 | 88.59 |
| KRH24833 | Soybean | nucleus | 88.59 | 88.59 |
| KRH24830 | Soybean | nucleus | 87.92 | 87.92 |
| CDX88779 | Canola | nucleus | 84.56 | 87.5 |
| CDX92329 | Canola | nucleus | 82.55 | 85.42 |
| CDX71015 | Canola | nucleus | 29.53 | 66.67 |
| CDX93584 | Canola | nucleus | 51.01 | 29.57 |
| CDX95087 | Canola | nucleus | 50.34 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078JW50 | UniProt:A0A078JW50 | EnsemblPlants:CDY71843 | ProteinID:CDY71843 |
| ProteinID:CDY71843.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00020681001 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 |
| SUPFAM:SSF47113 | UniParc:UPI0001817F55 | SEG:seg | : | : | : |
Description
BnaA07g37520DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078JW50]
Coordinates
chrLK047768:+:207..888
Molecular Weight (calculated)
16256.0 Da
IEP (calculated)
10.769
GRAVY (calculated)
-0.636
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAGKKPA EKKPAAAAEK PAEEVAEKAP AEKKPKAGKK LPKEAGAIDK KKKRNKKSIE TYKIYIFKVL KQVHPDIGIS SKAMGIMNSF INDIFEKLAQ
101: EASKLARYNK KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTSS
101: EASKLARYNK KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.