CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002436.1-P	Field mustard	nucleus	95.14	97.16
CDY26964	Canola	nucleus	95.14	97.16
CDX71019	Canola	nucleus	93.06	94.37
CDX88779	Canola	nucleus	92.36	92.36
AT5G22880.1	Thale cress	nucleus	91.67	91.03
CDX71064	Canola	nucleus	88.89	90.78
CDX88732	Canola	nucleus	88.89	90.78
CDX86049	Canola	nucleus	80.56	87.88
PGSC0003DMT400070383	Potato	nucleus	85.42	86.62
Solyc02g038690.1.1	Tomato	nucleus	80.56	86.57
PGSC0003DMT400022099	Potato	nucleus	85.42	85.42
CDX99134	Canola	nucleus	81.25	85.4
Solyc12g013510.1.1	Tomato	nucleus	81.94	84.89
Solyc11g007930.1.1	Tomato	nucleus	81.25	84.78
PGSC0003DMT400022074	Potato	nucleus	84.72	84.72
CDY09241	Canola	nucleus	82.64	83.8
KRH29836	Soybean	nucleus	86.11	83.78
KRH29832	Soybean	nucleus	86.11	83.78
KRH29831	Soybean	nucleus	86.11	83.78
CDX80214	Canola	nucleus	86.81	83.33
CDY30852	Canola	nucleus	79.86	83.33
CDY31584	Canola	nucleus	86.81	83.33
KRH24831	Soybean	nucleus	86.11	83.22
KRH24833	Soybean	nucleus	86.11	83.22
KRH29833	Soybean	nucleus	82.64	83.22
CDY15776	Canola	nucleus	85.42	83.11
VIT_13s0019g05370.t01	Wine grape	nucleus	83.33	82.76
KRH24830	Soybean	nucleus	85.42	82.55
CDY71843	Canola	nucleus	85.42	82.55
CDY52745	Canola	nucleus	77.78	81.75
CDX95762	Canola	nucleus	84.72	80.79
CDY72471	Canola	nucleus	85.42	80.39
CDX77199	Canola	nucleus	85.42	79.87
CDX83300	Canola	nucleus	84.72	78.71
PGSC0003DMT400074020	Potato	nucleus	70.14	74.81
Solyc10g044580.1.1	Tomato	nucleus	60.42	64.44
CDX71015	Canola	nucleus	28.47	62.12
CDX93584	Canola	nucleus	47.92	26.85
PGSC0003DMT400074018	Potato	nucleus	59.03	22.31
CDX95087	Canola	nucleus	47.92	21.63

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:A0A078DV32	EnsemblPlants:CDX92329	ProteinID:CDX92329	ProteinID:CDX92329.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00154062001	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621	PANTHER:PTHR23428
PANTHER:PTHR23428:SF172	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0004EE1B3C	SEG:seg	:

Description

BnaA10g13680D

Coordinates

chrLK031872:+:2820..3654

Molecular Weight (calculated)

15699.3 Da

IEP (calculated)

10.824

GRAVY (calculated)

-0.615

Length

144 amino acids

Sequence
(BLAST)

001: MAKADKKPAE KKPAEATTAA AAEKKPKAGK KLPKDPAVAG DKKKKRTKKS VETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL AGESSKLARY
101: NKKPTIRGES RMEIQTAVRL VLPGELAKHA VSEGTKAVTK FTSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.