CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003150.1-P	Field mustard	nucleus	99.27	98.55
CDY30852	Canola	nucleus	97.81	97.1
AT2G37470.1	Thale cress	nucleus	94.16	93.48
KRH67549	Soybean	nucleus	91.24	90.58
KRG95819	Soybean	nucleus	91.24	90.58
KRH19721	Soybean	nucleus	91.24	89.93
CDX86049	Canola	nucleus	86.13	89.39
KRG92106	Soybean	nucleus	87.59	88.24
CDX99134	Canola	nucleus	87.59	87.59
KRH34681	Soybean	nucleus	86.86	86.86
Solyc11g066430.1.1	Tomato	nucleus	88.32	86.43
Solyc06g074790.1.1	Tomato	nucleus	86.86	83.8
PGSC0003DMT400001108	Potato	nucleus	86.86	83.8
PGSC0003DMT400018456	Potato	nucleus	86.13	83.1
CDX88732	Canola	nucleus	85.4	82.98
CDX71064	Canola	nucleus	85.4	82.98
CDY15776	Canola	nucleus	89.05	82.43
CDY09241	Canola	nucleus	85.4	82.39
CDY31584	Canola	nucleus	89.78	82.0
CDX80214	Canola	nucleus	89.78	82.0
CDY71843	Canola	nucleus	89.05	81.88
CDX71019	Canola	nucleus	84.67	81.69
CDY26964	Canola	nucleus	83.94	81.56
Solyc06g074780.1.1	Tomato	nucleus	84.67	81.12
CDX95762	Canola	nucleus	89.05	80.79
CDY72471	Canola	nucleus	89.78	80.39
CDX77199	Canola	nucleus	89.78	79.87
CDX88779	Canola	nucleus	83.94	79.86
PGSC0003DMT400018455	Potato	nucleus	83.21	79.72
CDX83300	Canola	nucleus	89.05	78.71
CDX92329	Canola	nucleus	81.75	77.78
CDX71015	Canola	nucleus	32.12	66.67
CDX93584	Canola	nucleus	51.82	27.63
CDX95087	Canola	nucleus	51.09	21.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:A0A078INV5	UniProt:A0A078INV5	EnsemblPlants:CDY52745	ProteinID:CDY52745
ProteinID:CDY52745.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00007688001	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF155	SMART:SM00427
SUPFAM:SSF47113	UniParc:UPI0004EDCFE5	SEG:seg	:	:	:

Description

BnaA07g37600DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078INV5]

Coordinates

chrLK033124:-:5718..6131

Molecular Weight (calculated)

15170.6 Da

IEP (calculated)

10.767

GRAVY (calculated)

-0.766

Length

137 amino acids

Sequence
(BLAST)

001: MAPKAAEKKP AEKKPAEKSP AEKRPKAEKK ISKEGGSEKK KKSKKSIETY KIYIFKVLKQ VHPDIGISGK AMGIMNSFIN DIFEKLAQES SKLARYNKKP
101: TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSN

Best Arabidopsis Sequence Match ( AT2G37470.1 )
(BLAST)

001: MAPKAAEKKP AEKKPAGKAP AEKLPKAEKK ISKDAGGSEK KKKKSKKSVE TYKIYIFKVL KQVHPDVGIS GKAMGIMNSF INDIFEKLAQ ESSKLARYNK
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS

Arabidopsis Description

Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.