Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002520.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY31584 | Canola | nucleus | 99.33 | 99.33 |
| AT3G46030.1 | Thale cress | nucleus | 96.0 | 99.31 |
| AT3G45980.1 | Thale cress | nucleus | 98.0 | 98.0 |
| CDY09241 | Canola | nucleus | 92.0 | 97.18 |
| CDX86049 | Canola | nucleus | 82.67 | 93.94 |
| CDX71064 | Canola | nucleus | 87.33 | 92.91 |
| CDX88732 | Canola | nucleus | 87.33 | 92.91 |
| CDX99134 | Canola | nucleus | 84.0 | 91.97 |
| CDY15776 | Canola | nucleus | 90.67 | 91.89 |
| CDY30852 | Canola | nucleus | 84.0 | 91.3 |
| CDY71843 | Canola | nucleus | 90.67 | 91.28 |
| CDY26964 | Canola | nucleus | 85.33 | 90.78 |
| CDX71019 | Canola | nucleus | 85.33 | 90.14 |
| CDX95762 | Canola | nucleus | 90.67 | 90.07 |
| CDY52745 | Canola | nucleus | 82.0 | 89.78 |
| CDY72471 | Canola | nucleus | 90.67 | 88.89 |
| CDX88779 | Canola | nucleus | 85.33 | 88.89 |
| CDX77199 | Canola | nucleus | 90.67 | 88.31 |
| CDX83300 | Canola | nucleus | 90.67 | 87.74 |
| CDX92329 | Canola | nucleus | 83.33 | 86.81 |
| CDX71015 | Canola | nucleus | 30.0 | 68.18 |
| CDX93584 | Canola | nucleus | 50.67 | 29.57 |
| CDX95087 | Canola | nucleus | 50.0 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078CW02 | EnsemblPlants:CDX80214 | ProteinID:CDX80214 | ProteinID:CDX80214.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00133162001 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI0002543D07 | SEG:seg |
Description
BnaC09g35280D
Coordinates
chrLK031820:-:567932..568798
Molecular Weight (calculated)
16395.2 Da
IEP (calculated)
10.748
GRAVY (calculated)
-0.757
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKKPASEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: GESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: GESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
001: MAPKAEKKPA EKKPASEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: QEASKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: QEASKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
HTB4Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.