Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038267.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX86049 | Canola | nucleus | 94.89 | 98.48 |
| CDY30852 | Canola | nucleus | 89.78 | 89.13 |
| CDY52745 | Canola | nucleus | 87.59 | 87.59 |
| Solyc11g066430.1.1 | Tomato | nucleus | 89.05 | 87.14 |
| CDY09241 | Canola | nucleus | 89.78 | 86.62 |
| PGSC0003DMT400001108 | Potato | nucleus | 89.78 | 86.62 |
| CDX71019 | Canola | nucleus | 88.32 | 85.21 |
| Solyc06g074790.1.1 | Tomato | nucleus | 88.32 | 85.21 |
| CDX88732 | Canola | nucleus | 87.59 | 85.11 |
| CDX71064 | Canola | nucleus | 87.59 | 85.11 |
| CDY26964 | Canola | nucleus | 87.59 | 85.11 |
| CDX88779 | Canola | nucleus | 89.05 | 84.72 |
| PGSC0003DMT400018456 | Potato | nucleus | 87.59 | 84.51 |
| CDY31584 | Canola | nucleus | 91.97 | 84.0 |
| CDX80214 | Canola | nucleus | 91.97 | 84.0 |
| CDY15776 | Canola | nucleus | 89.78 | 83.11 |
| CDY71843 | Canola | nucleus | 89.78 | 82.55 |
| Solyc06g074780.1.1 | Tomato | nucleus | 85.4 | 81.82 |
| PGSC0003DMT400018455 | Potato | nucleus | 85.4 | 81.82 |
| CDX95762 | Canola | nucleus | 89.78 | 81.46 |
| CDX92329 | Canola | nucleus | 85.4 | 81.25 |
| CDY72471 | Canola | nucleus | 90.51 | 81.05 |
| CDX77199 | Canola | nucleus | 90.51 | 80.52 |
| CDX83300 | Canola | nucleus | 89.78 | 79.35 |
| CDX71015 | Canola | nucleus | 32.12 | 66.67 |
| CDX93584 | Canola | nucleus | 51.82 | 27.63 |
| CDX95087 | Canola | nucleus | 51.09 | 21.94 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078EE93 | EnsemblPlants:CDX99134 | ProteinID:CDX99134 | ProteinID:CDX99134.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00107292001 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF172 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI0001817F60 | SEG:seg |
Description
BnaA06g18250D
Coordinates
chrLK031908:+:611288..611701
Molecular Weight (calculated)
15042.6 Da
IEP (calculated)
10.768
GRAVY (calculated)
-0.598
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAAEKKP VEEKAPAEKK PKAGKKLPKE AGAGVDMKKK KKSKKSVETY KIYIFKVLKQ VHPDVGISSK AMGIMNSFIN DIFEKLAQES SKLARYNKKP
101: TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSS
101: TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.