Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71843 | Canola | nucleus | 100.0 | 99.33 |
| Bra011930.1-P | Field mustard | nucleus | 99.32 | 98.66 |
| CDY72471 | Canola | nucleus | 98.65 | 95.42 |
| CDX95762 | Canola | nucleus | 97.3 | 95.36 |
| CDX77199 | Canola | nucleus | 98.65 | 94.81 |
| CDX83300 | Canola | nucleus | 97.3 | 92.9 |
| CDX86049 | Canola | nucleus | 81.76 | 91.67 |
| CDY31584 | Canola | nucleus | 92.57 | 91.33 |
| CDY09241 | Canola | nucleus | 87.16 | 90.85 |
| CDX71064 | Canola | nucleus | 86.49 | 90.78 |
| CDX88732 | Canola | nucleus | 86.49 | 90.78 |
| AT2G28720.1 | Thale cress | nucleus | 92.57 | 90.73 |
| CDX80214 | Canola | nucleus | 91.89 | 90.67 |
| CDX99134 | Canola | nucleus | 83.11 | 89.78 |
| CDY26964 | Canola | nucleus | 85.14 | 89.36 |
| KRH29836 | Soybean | nucleus | 89.19 | 89.19 |
| KRH29831 | Soybean | nucleus | 89.19 | 89.19 |
| KRH29832 | Soybean | nucleus | 89.19 | 89.19 |
| CDY30852 | Canola | nucleus | 83.11 | 89.13 |
| CDY52745 | Canola | nucleus | 82.43 | 89.05 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 87.16 | 88.97 |
| KRH29833 | Soybean | nucleus | 85.81 | 88.81 |
| CDX71019 | Canola | nucleus | 85.14 | 88.73 |
| KRH24831 | Soybean | nucleus | 89.19 | 88.59 |
| KRH24833 | Soybean | nucleus | 89.19 | 88.59 |
| KRH24830 | Soybean | nucleus | 88.51 | 87.92 |
| CDX88779 | Canola | nucleus | 85.14 | 87.5 |
| CDX92329 | Canola | nucleus | 83.11 | 85.42 |
| CDX71015 | Canola | nucleus | 29.73 | 66.67 |
| CDX93584 | Canola | nucleus | 51.35 | 29.57 |
| CDX95087 | Canola | nucleus | 50.68 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078FRK5 | UniProt:A0A078FRK5 | EnsemblPlants:CDY15776 | ProteinID:CDY15776 |
| ProteinID:CDY15776.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00090046001 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 |
| SUPFAM:SSF47113 | UniParc:UPI0004EBE36C | SEG:seg | : | : | : |
Description
BnaC04g15480DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078FRK5]
Coordinates
chrLK032057:+:587683..588378
Molecular Weight (calculated)
16184.9 Da
IEP (calculated)
10.769
GRAVY (calculated)
-0.652
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAGKKPA EKKPAAAEKP AEEVAEKAPA EKKPKAGKKL PKEAGAIDKK KKRNKKSIET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: ASKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: ASKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
Arabidopsis Description
Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.